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dbVar

Database of genomic structural variation

nsv5924087

Organism: Homo sapiens

Study:nstd209 (Almarri et al. 2020)
Variant Type:copy number variation
Method Type:Sequencing
Submitted on:GRCh38

Variant Calls:1
Validation:Not tested
Clinical Assertions: No
Region Size:72

Publication(s):Almarri et al. 2020

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 184 SVs from 29 studies. See in: genome view

Submitted genomic133,223,553-133,223,624

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Start	Stop
nsv5924087	Submitted genomic		GRCh38 (hg38)	Primary Assembly		NC_000009.12	Chr9	133,223,553	133,223,624
nsv5924087	Remapped	Perfect	GRCh37.p13	Primary Assembly	Second Pass	NC_000009.11	Chr9	136,098,940	136,099,011
nsv5924087	Remapped	Perfect	GRCh37.p13	PATCHES	First Pass	NW_003315925.1	Chr9\|NW_00 3315925.1	49,499	49,570

Variant Call Information

Variant Call ID	Type	Method	Analysis
nssv17449409	deletion	Sequencing	Sequence alignment

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Start	Stop
nssv17449409	Submitted genomic		NC_000009.12:g.133 223553_133223624de l	GRCh38 (hg38)		NC_000009.12	Chr9	133,223,553	133,223,624
nssv17449409	Remapped	Perfect	NW_003315925.1:g.4 9499_49570del	GRCh37.p13	First Pass	NW_003315925.1	Chr9\|NW_00 3315925.1	49,499	49,570
nssv17449409	Remapped	Perfect	NC_000009.11:g.136 098940_136099011de l	GRCh37.p13	Second Pass	NC_000009.11	Chr9	136,098,940	136,099,011

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

Genotype and/or allele frequency data can be found on dbVar's FTP site.

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