nsv5970825
- Organism: Homo sapiens
- Study:nstd209 (Almarri et al. 2020)
- Variant Type:copy number variation
- Method Type:Sequencing
- Submitted on:GRCh38
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:4,500
- Publication(s):Almarri et al. 2020
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 380 SVs from 26 studies. See in: genome view
Overlapping variant regions from other studies: 375 SVs from 26 studies. See in: genome view
Overlapping variant regions from other studies: 4 SVs from 3 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv5970825 | Submitted genomic | GRCh38 (hg38) | Primary Assembly | NC_000023.11 | ChrX | 72,383,616 | 72,388,115 | ||
| nsv5970825 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | Second Pass | NC_000023.10 | ChrX | 71,603,466 | 71,607,965 |
| nsv5970825 | Remapped | Perfect | GRCh37.p13 | PATCHES | First Pass | NW_004070882.1 | ChrX|NW_00 4070882.1 | 72,633 | 77,132 |
Variant Call Information
| Variant Call ID | Type | Method | Analysis | Copy number |
|---|---|---|---|---|
| nssv17516693 | copy number variation | Sequencing | Sequence alignment | 0 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|
| nssv17516693 | Submitted genomic | GRCh38 (hg38) | NC_000023.11 | ChrX | 72,383,616 | 72,388,115 | ||
| nssv17516693 | Remapped | Perfect | GRCh37.p13 | First Pass | NW_004070882.1 | ChrX|NW_00 4070882.1 | 72,633 | 77,132 |
| nssv17516693 | Remapped | Perfect | GRCh37.p13 | Second Pass | NC_000023.10 | ChrX | 71,603,466 | 71,607,965 |