nsv5971079
- Organism: Homo sapiens
- Study:nstd209 (Almarri et al. 2020)
- Variant Type:copy number variation
- Method Type:Sequencing
- Submitted on:GRCh38
- Variant Calls:2
- Validation:Not tested
- Clinical Assertions: No
- Region Size:2,987
- Publication(s):Almarri et al. 2020
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 447 SVs from 43 studies. See in: genome view
Overlapping variant regions from other studies: 446 SVs from 43 studies. See in: genome view
Overlapping variant regions from other studies: 46 SVs from 15 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv5971079 | Submitted genomic | GRCh38 (hg38) | Primary Assembly | NC_000023.11 | ChrX | 52,858,718 | 52,861,704 | ||
| nsv5971079 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | Second Pass | NC_000023.10 | ChrX | 52,887,747 | 52,890,733 |
| nsv5971079 | Remapped | Perfect | GRCh37.p13 | PATCHES | First Pass | NW_004070877.1 | ChrX|NW_00 4070877.1 | 2,571,833 | 2,574,819 |
Variant Call Information
| Variant Call ID | Type | Method | Analysis | Copy number |
|---|---|---|---|---|
| nssv17516355 | copy number variation | Sequencing | Sequence alignment | 0 |
| nssv17516356 | copy number variation | Sequencing | Sequence alignment | 2 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|
| nssv17516355 | Submitted genomic | GRCh38 (hg38) | NC_000023.11 | ChrX | 52,858,718 | 52,861,704 | ||
| nssv17516356 | Submitted genomic | GRCh38 (hg38) | NC_000023.11 | ChrX | 52,858,718 | 52,861,704 | ||
| nssv17516355 | Remapped | Perfect | GRCh37.p13 | First Pass | NW_004070877.1 | ChrX|NW_00 4070877.1 | 2,571,833 | 2,574,819 |
| nssv17516356 | Remapped | Perfect | GRCh37.p13 | First Pass | NW_004070877.1 | ChrX|NW_00 4070877.1 | 2,571,833 | 2,574,819 |
| nssv17516355 | Remapped | Perfect | GRCh37.p13 | Second Pass | NC_000023.10 | ChrX | 52,887,747 | 52,890,733 |
| nssv17516356 | Remapped | Perfect | GRCh37.p13 | Second Pass | NC_000023.10 | ChrX | 52,887,747 | 52,890,733 |