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dbVar

Database of genomic structural variation

nsv603837

Organism: Homo sapiens

Study:nstd54 (Cooper et al. 2011)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:NCBI36 (hg18)

Variant Calls:5
Validation:Not tested
Clinical Assertions: No
Region Size:76,633

Publication(s):Cooper et al. 2011

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 2435 SVs from 96 studies. See in: genome view

Remapped(Score: Perfect):78,255,808-78,332,440

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv603837	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000006.12	Chr6	78,255,808	78,332,440
nsv603837	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000006.11	Chr6	78,965,525	79,042,157
nsv603837	Submitted genomic		NCBI36 (hg18)	Primary Assembly		NC_000006.10	Chr6	79,022,244	79,098,876

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv1065649	copy number loss		SNP array	SNP genotyping analysis
nssv1065650	copy number loss		SNP array	SNP genotyping analysis
nssv1154177	copy number gain	1780854305_A	SNP array	SNP genotyping analysis	nssv1154684, nssv1156758
nssv1154178	copy number loss	1780862071_A	SNP array	SNP genotyping analysis	6
nssv1154179	copy number loss	1780862095_A	SNP array	SNP genotyping analysis	nssv1176430, nssv1155583, nssv1156669

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv1065649	Remapped	Perfect	NC_000006.12:g.(?_ 78255808)_(7833244 0_?)del	GRCh38.p12	First Pass	NC_000006.12	Chr6	78,255,808	78,332,440
nssv1065650	Remapped	Perfect	NC_000006.12:g.(?_ 78255808)_(7833244 0_?)del	GRCh38.p12	First Pass	NC_000006.12	Chr6	78,255,808	78,332,440
nssv1154177	Remapped	Perfect	NC_000006.12:g.(?_ 78255808)_(7833244 0_?)dup	GRCh38.p12	First Pass	NC_000006.12	Chr6	78,255,808	78,332,440
nssv1154178	Remapped	Perfect	NC_000006.12:g.(?_ 78255808)_(7833244 0_?)del	GRCh38.p12	First Pass	NC_000006.12	Chr6	78,255,808	78,332,440
nssv1154179	Remapped	Perfect	NC_000006.12:g.(?_ 78255808)_(7833244 0_?)del	GRCh38.p12	First Pass	NC_000006.12	Chr6	78,255,808	78,332,440
nssv1065649	Remapped	Perfect	NC_000006.11:g.(?_ 78965525)_(7904215 7_?)del	GRCh37.p13	First Pass	NC_000006.11	Chr6	78,965,525	79,042,157
nssv1065650	Remapped	Perfect	NC_000006.11:g.(?_ 78965525)_(7904215 7_?)del	GRCh37.p13	First Pass	NC_000006.11	Chr6	78,965,525	79,042,157
nssv1154177	Remapped	Perfect	NC_000006.11:g.(?_ 78965525)_(7904215 7_?)dup	GRCh37.p13	First Pass	NC_000006.11	Chr6	78,965,525	79,042,157
nssv1154178	Remapped	Perfect	NC_000006.11:g.(?_ 78965525)_(7904215 7_?)del	GRCh37.p13	First Pass	NC_000006.11	Chr6	78,965,525	79,042,157
nssv1154179	Remapped	Perfect	NC_000006.11:g.(?_ 78965525)_(7904215 7_?)del	GRCh37.p13	First Pass	NC_000006.11	Chr6	78,965,525	79,042,157
nssv1065649	Submitted genomic		NC_000006.10:g.(?_ 79022244)_(7909887 6_?)del	NCBI36 (hg18)		NC_000006.10	Chr6	79,022,244	79,098,876
nssv1065650	Submitted genomic		NC_000006.10:g.(?_ 79022244)_(7909887 6_?)del	NCBI36 (hg18)		NC_000006.10	Chr6	79,022,244	79,098,876
nssv1154177	Submitted genomic		NC_000006.10:g.(?_ 79022244)_(7909887 6_?)dup	NCBI36 (hg18)		NC_000006.10	Chr6	79,022,244	79,098,876
nssv1154178	Submitted genomic		NC_000006.10:g.(?_ 79022244)_(7909887 6_?)del	NCBI36 (hg18)		NC_000006.10	Chr6	79,022,244	79,098,876
nssv1154179	Submitted genomic		NC_000006.10:g.(?_ 79022244)_(7909887 6_?)del	NCBI36 (hg18)		NC_000006.10	Chr6	79,022,244	79,098,876

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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