nsv603907
- Organism: Homo sapiens
- Study:nstd54 (Cooper et al. 2011)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:17
- Validation:Not tested
- Clinical Assertions: No
- Region Size:58,389
- Publication(s):Cooper et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 2348 SVs from 95 studies. See in: genome view
Overlapping variant regions from other studies: 2348 SVs from 95 studies. See in: genome view
Overlapping variant regions from other studies: 1049 SVs from 32 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv603907 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000006.12 | Chr6 | 78,265,373 | 78,323,761 |
| nsv603907 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000006.11 | Chr6 | 78,975,090 | 79,033,478 |
| nsv603907 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000006.10 | Chr6 | 79,031,809 | 79,090,197 |
Variant Call Information
| Variant Call ID | Type | Method | Analysis |
|---|---|---|---|
| nssv1066709 | copy number loss | SNP array | SNP genotyping analysis |
| nssv1066710 | copy number loss | SNP array | SNP genotyping analysis |
| nssv1066711 | copy number loss | SNP array | SNP genotyping analysis |
| nssv1066712 | copy number loss | SNP array | SNP genotyping analysis |
| nssv1066713 | copy number loss | SNP array | SNP genotyping analysis |
| nssv1066714 | copy number loss | SNP array | SNP genotyping analysis |
| nssv1066715 | copy number loss | SNP array | SNP genotyping analysis |
| nssv1066716 | copy number gain | SNP array | SNP genotyping analysis |
| nssv1066717 | copy number loss | SNP array | SNP genotyping analysis |
| nssv1066718 | copy number loss | SNP array | SNP genotyping analysis |
| nssv1066719 | copy number gain | SNP array | SNP genotyping analysis |
| nssv1066720 | copy number loss | SNP array | SNP genotyping analysis |
| nssv1066721 | copy number gain | SNP array | SNP genotyping analysis |
| nssv1066722 | copy number loss | SNP array | SNP genotyping analysis |
| nssv1066723 | copy number loss | SNP array | SNP genotyping analysis |
| nssv1066724 | copy number loss | SNP array | SNP genotyping analysis |
| nssv1066725 | copy number loss | SNP array | SNP genotyping analysis |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv1066709 | Remapped | Perfect | NC_000006.12:g.(?_ 78265373)_(7832376 1_?)del | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 78,265,373 | 78,323,761 |
| nssv1066710 | Remapped | Perfect | NC_000006.12:g.(?_ 78265373)_(7832376 1_?)del | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 78,265,373 | 78,323,761 |
| nssv1066711 | Remapped | Perfect | NC_000006.12:g.(?_ 78265373)_(7832376 1_?)del | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 78,265,373 | 78,323,761 |
| nssv1066712 | Remapped | Perfect | NC_000006.12:g.(?_ 78265373)_(7832376 1_?)del | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 78,265,373 | 78,323,761 |
| nssv1066713 | Remapped | Perfect | NC_000006.12:g.(?_ 78265373)_(7832376 1_?)del | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 78,265,373 | 78,323,761 |
| nssv1066714 | Remapped | Perfect | NC_000006.12:g.(?_ 78265373)_(7832376 1_?)del | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 78,265,373 | 78,323,761 |
| nssv1066715 | Remapped | Perfect | NC_000006.12:g.(?_ 78265373)_(7832376 1_?)del | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 78,265,373 | 78,323,761 |
| nssv1066716 | Remapped | Perfect | NC_000006.12:g.(?_ 78265373)_(7832376 1_?)dup | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 78,265,373 | 78,323,761 |
| nssv1066717 | Remapped | Perfect | NC_000006.12:g.(?_ 78265373)_(7832376 1_?)del | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 78,265,373 | 78,323,761 |
| nssv1066718 | Remapped | Perfect | NC_000006.12:g.(?_ 78265373)_(7832376 1_?)del | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 78,265,373 | 78,323,761 |
| nssv1066719 | Remapped | Perfect | NC_000006.12:g.(?_ 78265373)_(7832376 1_?)dup | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 78,265,373 | 78,323,761 |
| nssv1066720 | Remapped | Perfect | NC_000006.12:g.(?_ 78265373)_(7832376 1_?)del | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 78,265,373 | 78,323,761 |
| nssv1066721 | Remapped | Perfect | NC_000006.12:g.(?_ 78265373)_(7832376 1_?)dup | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 78,265,373 | 78,323,761 |
| nssv1066722 | Remapped | Perfect | NC_000006.12:g.(?_ 78265373)_(7832376 1_?)del | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 78,265,373 | 78,323,761 |
| nssv1066723 | Remapped | Perfect | NC_000006.12:g.(?_ 78265373)_(7832376 1_?)del | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 78,265,373 | 78,323,761 |
| nssv1066724 | Remapped | Perfect | NC_000006.12:g.(?_ 78265373)_(7832376 1_?)del | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 78,265,373 | 78,323,761 |
| nssv1066725 | Remapped | Perfect | NC_000006.12:g.(?_ 78265373)_(7832376 1_?)del | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 78,265,373 | 78,323,761 |
| nssv1066709 | Remapped | Perfect | NC_000006.11:g.(?_ 78975090)_(7903347 8_?)del | GRCh37.p13 | First Pass | NC_000006.11 | Chr6 | 78,975,090 | 79,033,478 |
| nssv1066710 | Remapped | Perfect | NC_000006.11:g.(?_ 78975090)_(7903347 8_?)del | GRCh37.p13 | First Pass | NC_000006.11 | Chr6 | 78,975,090 | 79,033,478 |
| nssv1066711 | Remapped | Perfect | NC_000006.11:g.(?_ 78975090)_(7903347 8_?)del | GRCh37.p13 | First Pass | NC_000006.11 | Chr6 | 78,975,090 | 79,033,478 |
| nssv1066712 | Remapped | Perfect | NC_000006.11:g.(?_ 78975090)_(7903347 8_?)del | GRCh37.p13 | First Pass | NC_000006.11 | Chr6 | 78,975,090 | 79,033,478 |
| nssv1066713 | Remapped | Perfect | NC_000006.11:g.(?_ 78975090)_(7903347 8_?)del | GRCh37.p13 | First Pass | NC_000006.11 | Chr6 | 78,975,090 | 79,033,478 |
| nssv1066714 | Remapped | Perfect | NC_000006.11:g.(?_ 78975090)_(7903347 8_?)del | GRCh37.p13 | First Pass | NC_000006.11 | Chr6 | 78,975,090 | 79,033,478 |
| nssv1066715 | Remapped | Perfect | NC_000006.11:g.(?_ 78975090)_(7903347 8_?)del | GRCh37.p13 | First Pass | NC_000006.11 | Chr6 | 78,975,090 | 79,033,478 |
| nssv1066716 | Remapped | Perfect | NC_000006.11:g.(?_ 78975090)_(7903347 8_?)dup | GRCh37.p13 | First Pass | NC_000006.11 | Chr6 | 78,975,090 | 79,033,478 |
| nssv1066717 | Remapped | Perfect | NC_000006.11:g.(?_ 78975090)_(7903347 8_?)del | GRCh37.p13 | First Pass | NC_000006.11 | Chr6 | 78,975,090 | 79,033,478 |
| nssv1066718 | Remapped | Perfect | NC_000006.11:g.(?_ 78975090)_(7903347 8_?)del | GRCh37.p13 | First Pass | NC_000006.11 | Chr6 | 78,975,090 | 79,033,478 |
| nssv1066719 | Remapped | Perfect | NC_000006.11:g.(?_ 78975090)_(7903347 8_?)dup | GRCh37.p13 | First Pass | NC_000006.11 | Chr6 | 78,975,090 | 79,033,478 |
| nssv1066720 | Remapped | Perfect | NC_000006.11:g.(?_ 78975090)_(7903347 8_?)del | GRCh37.p13 | First Pass | NC_000006.11 | Chr6 | 78,975,090 | 79,033,478 |
| nssv1066721 | Remapped | Perfect | NC_000006.11:g.(?_ 78975090)_(7903347 8_?)dup | GRCh37.p13 | First Pass | NC_000006.11 | Chr6 | 78,975,090 | 79,033,478 |
| nssv1066722 | Remapped | Perfect | NC_000006.11:g.(?_ 78975090)_(7903347 8_?)del | GRCh37.p13 | First Pass | NC_000006.11 | Chr6 | 78,975,090 | 79,033,478 |
| nssv1066723 | Remapped | Perfect | NC_000006.11:g.(?_ 78975090)_(7903347 8_?)del | GRCh37.p13 | First Pass | NC_000006.11 | Chr6 | 78,975,090 | 79,033,478 |
| nssv1066724 | Remapped | Perfect | NC_000006.11:g.(?_ 78975090)_(7903347 8_?)del | GRCh37.p13 | First Pass | NC_000006.11 | Chr6 | 78,975,090 | 79,033,478 |
| nssv1066725 | Remapped | Perfect | NC_000006.11:g.(?_ 78975090)_(7903347 8_?)del | GRCh37.p13 | First Pass | NC_000006.11 | Chr6 | 78,975,090 | 79,033,478 |
| nssv1066709 | Submitted genomic | NC_000006.10:g.(?_ 79031809)_(7909019 7_?)del | NCBI36 (hg18) | NC_000006.10 | Chr6 | 79,031,809 | 79,090,197 | ||
| nssv1066710 | Submitted genomic | NC_000006.10:g.(?_ 79031809)_(7909019 7_?)del | NCBI36 (hg18) | NC_000006.10 | Chr6 | 79,031,809 | 79,090,197 | ||
| nssv1066711 | Submitted genomic | NC_000006.10:g.(?_ 79031809)_(7909019 7_?)del | NCBI36 (hg18) | NC_000006.10 | Chr6 | 79,031,809 | 79,090,197 | ||
| nssv1066712 | Submitted genomic | NC_000006.10:g.(?_ 79031809)_(7909019 7_?)del | NCBI36 (hg18) | NC_000006.10 | Chr6 | 79,031,809 | 79,090,197 | ||
| nssv1066713 | Submitted genomic | NC_000006.10:g.(?_ 79031809)_(7909019 7_?)del | NCBI36 (hg18) | NC_000006.10 | Chr6 | 79,031,809 | 79,090,197 | ||
| nssv1066714 | Submitted genomic | NC_000006.10:g.(?_ 79031809)_(7909019 7_?)del | NCBI36 (hg18) | NC_000006.10 | Chr6 | 79,031,809 | 79,090,197 | ||
| nssv1066715 | Submitted genomic | NC_000006.10:g.(?_ 79031809)_(7909019 7_?)del | NCBI36 (hg18) | NC_000006.10 | Chr6 | 79,031,809 | 79,090,197 | ||
| nssv1066716 | Submitted genomic | NC_000006.10:g.(?_ 79031809)_(7909019 7_?)dup | NCBI36 (hg18) | NC_000006.10 | Chr6 | 79,031,809 | 79,090,197 | ||
| nssv1066717 | Submitted genomic | NC_000006.10:g.(?_ 79031809)_(7909019 7_?)del | NCBI36 (hg18) | NC_000006.10 | Chr6 | 79,031,809 | 79,090,197 | ||
| nssv1066718 | Submitted genomic | NC_000006.10:g.(?_ 79031809)_(7909019 7_?)del | NCBI36 (hg18) | NC_000006.10 | Chr6 | 79,031,809 | 79,090,197 | ||
| nssv1066719 | Submitted genomic | NC_000006.10:g.(?_ 79031809)_(7909019 7_?)dup | NCBI36 (hg18) | NC_000006.10 | Chr6 | 79,031,809 | 79,090,197 | ||
| nssv1066720 | Submitted genomic | NC_000006.10:g.(?_ 79031809)_(7909019 7_?)del | NCBI36 (hg18) | NC_000006.10 | Chr6 | 79,031,809 | 79,090,197 | ||
| nssv1066721 | Submitted genomic | NC_000006.10:g.(?_ 79031809)_(7909019 7_?)dup | NCBI36 (hg18) | NC_000006.10 | Chr6 | 79,031,809 | 79,090,197 | ||
| nssv1066722 | Submitted genomic | NC_000006.10:g.(?_ 79031809)_(7909019 7_?)del | NCBI36 (hg18) | NC_000006.10 | Chr6 | 79,031,809 | 79,090,197 | ||
| nssv1066723 | Submitted genomic | NC_000006.10:g.(?_ 79031809)_(7909019 7_?)del | NCBI36 (hg18) | NC_000006.10 | Chr6 | 79,031,809 | 79,090,197 | ||
| nssv1066724 | Submitted genomic | NC_000006.10:g.(?_ 79031809)_(7909019 7_?)del | NCBI36 (hg18) | NC_000006.10 | Chr6 | 79,031,809 | 79,090,197 | ||
| nssv1066725 | Submitted genomic | NC_000006.10:g.(?_ 79031809)_(7909019 7_?)del | NCBI36 (hg18) | NC_000006.10 | Chr6 | 79,031,809 | 79,090,197 |