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dbVar

Database of genomic structural variation

nsv6134770

Organism: Homo sapiens

Study:nstd213 (Pham et al. 2021)
Variant Type:inversion
Method Type:Sequencing
Submitted on:GRCh37

Variant Calls:1
Validation:Not tested
Clinical Assertions: No
Region Size:78,434

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 331 SVs from 54 studies. See in: genome view

Remapped(Score: Good):175,386,481-175,464,914

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nsv6134770	Remapped	Good	GRCh38.p12	Primary Assembly	First Pass	NC_000003.12	Chr3	175,386,481	175,386,481	175,464,914	175,464,914
nsv6134770	Remapped	Good	GRCh38.p12	PATCHES	Second Pass	NW_019805489.1	Chr3\|NW_01 9805489.1	59,998	59,998	138,426	138,426
nsv6134770	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000003.11	Chr3	175,104,270	175,104,287	175,182,692	175,182,702

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv17677448	inversion	SAMN20524660	Sequencing	Paired-end mapping	208

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nssv17677448	Remapped	Good	NW_019805489.1:g.( 59998_59998)_(1384 26_138426)inv	GRCh38.p12	Second Pass	NW_019805489.1	Chr3\|NW_01 9805489.1	59,998	59,998	138,426	138,426
nssv17677448	Remapped	Good	NC_000003.12:g.(17 5386481_175386481) _(175464914_175464 914)inv	GRCh38.p12	First Pass	NC_000003.12	Chr3	175,386,481	175,386,481	175,464,914	175,464,914
nssv17677448	Submitted genomic		NC_000003.11:g.(17 5104270_175104287) _(175182692_175182 702)inv	GRCh37 (hg19)		NC_000003.11	Chr3	175,104,270	175,104,287	175,182,692	175,182,702

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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