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dbVar

Database of genomic structural variation

nsv6137517

Organism: Homo sapiens

Study:nstd213 (Pham et al. 2021)
Variant Type:translocation
Method Type:Sequencing
Submitted on:GRCh37

Variant Calls:1
Validation:Not tested
Clinical Assertions: No
Region Size:1

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 152 SVs from 20 studies. See in: genome view

Remapped(Score: Perfect):172,148,345-172,148,345

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Start	Stop	strand
nsv6137517	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000001.11	Chr1	172,148,345	172,148,345	-
nsv6137517	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000010.11	Chr10	77,947,638	77,947,638	+
nsv6137517	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000001.10	Chr1	172,117,485	172,117,485	-
nsv6137517	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000010.10	Chr10	79,707,396	79,707,396	+

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv17679952	interchromosomal translocation	SAMN20524662	Sequencing	Paired-end mapping	1,603

Variant Call Placement Information

Variant Call ID	Placement Type	Score	Assembly	Reciprocity	Sequence ID	Chr	Start	Stop	strand
nssv17679952	Remapped	Perfect	GRCh38.p12	First Pass	NC_000001.11	Chr1	172,148,345	172,148,345	-
nssv17679952	Remapped	Perfect	GRCh38.p12	First Pass	NC_000010.11	Chr10	77,947,638	77,947,638	+
nssv17679952	Submitted genomic		GRCh37 (hg19)		NC_000001.10	Chr1	172,117,485	172,117,485	-
nssv17679952	Submitted genomic		GRCh37 (hg19)		NC_000010.10	Chr10	79,707,396	79,707,396	+

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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