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dbVar

Database of genomic structural variation

nsv6137552

Organism: Homo sapiens

Study:nstd213 (Pham et al. 2021)
Variant Type:translocation
Method Type:Sequencing
Submitted on:GRCh37

Variant Calls:1
Validation:Not tested
Clinical Assertions: No
Region Size:1

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 92 SVs from 21 studies. See in: genome view

Remapped(Score: Perfect):180,558,009-180,558,009

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Start	Stop	strand
nsv6137552	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000005.10	Chr5	180,558,009	180,558,009	-
nsv6137552	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000005.10	Chr5	76,843,528	76,843,528	+
nsv6137552	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000005.9	Chr5	179,985,009	179,985,009	-
nsv6137552	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000005.9	Chr5	76,139,353	76,139,353	+

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv17682407	intrachromosomal translocation	SAMN20524664	Sequencing	Paired-end mapping	739

Variant Call Placement Information

Variant Call ID	Placement Type	Score	Assembly	Reciprocity	Sequence ID	Chr	Start	Stop	strand
nssv17682407	Remapped	Perfect	GRCh38.p12	First Pass	NC_000005.10	Chr5	76,843,528	76,843,528	+
nssv17682407	Remapped	Perfect	GRCh38.p12	First Pass	NC_000005.10	Chr5	180,558,009	180,558,009	-
nssv17682407	Submitted genomic		GRCh37 (hg19)		NC_000005.9	Chr5	76,139,353	76,139,353	+
nssv17682407	Submitted genomic		GRCh37 (hg19)		NC_000005.9	Chr5	179,985,009	179,985,009	-

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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