nsv6137559
- Organism: Homo sapiens
- Study:nstd213 (Pham et al. 2021)
- Variant Type:translocation
- Method Type:Sequencing
- Submitted on:GRCh37
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:1
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 79 SVs from 14 studies. See in: genome view
Overlapping variant regions from other studies: 69 SVs from 16 studies. See in: genome view
Overlapping variant regions from other studies: 79 SVs from 14 studies. See in: genome view
Overlapping variant regions from other studies: 69 SVs from 16 studies. See in: genome view
Variant Region Placement Information
Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop | strand |
---|---|---|---|---|---|---|---|---|---|---|
nsv6137559 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000005.10 | Chr5 | 161,606,965 | 161,606,965 | - |
nsv6137559 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000005.10 | Chr5 | 173,949,270 | 173,949,270 | + |
nsv6137559 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000005.9 | Chr5 | 161,033,971 | 161,033,971 | - | ||
nsv6137559 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000005.9 | Chr5 | 173,376,273 | 173,376,273 | + |
Variant Call Information
Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
---|---|---|---|---|---|
nssv17681148 | intrachromosomal translocation | SAMN20524664 | Sequencing | Paired-end mapping | 739 |
Variant Call Placement Information
Variant Call ID | Placement Type | Score | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop | strand |
---|---|---|---|---|---|---|---|---|---|
nssv17681148 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000005.10 | Chr5 | 161,606,965 | 161,606,965 | - |
nssv17681148 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000005.10 | Chr5 | 173,949,270 | 173,949,270 | + |
nssv17681148 | Submitted genomic | GRCh37 (hg19) | NC_000005.9 | Chr5 | 161,033,971 | 161,033,971 | - | ||
nssv17681148 | Submitted genomic | GRCh37 (hg19) | NC_000005.9 | Chr5 | 173,376,273 | 173,376,273 | + |