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dbVar

Database of genomic structural variation

nsv6137563

Organism: Homo sapiens

Study:nstd213 (Pham et al. 2021)
Variant Type:translocation
Method Type:Sequencing
Submitted on:GRCh37

Variant Calls:1
Validation:Not tested
Clinical Assertions: No
Region Size:1

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 68 SVs from 15 studies. See in: genome view

Remapped(Score: Perfect):153,286,382-153,286,382

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Start	Stop	strand
nsv6137563	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000005.10	Chr5	153,286,382	153,286,382	+
nsv6137563	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000005.10	Chr5	181,052,109	181,052,109	+
nsv6137563	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000005.9	Chr5	152,665,942	152,665,942	+
nsv6137563	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000005.9	Chr5	180,479,109	180,479,109	+

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv17680803	intrachromosomal translocation	SAMN20524664	Sequencing	Paired-end mapping	739

Variant Call Placement Information

Variant Call ID	Placement Type	Score	Assembly	Reciprocity	Sequence ID	Chr	Start	Stop	strand
nssv17680803	Remapped	Perfect	GRCh38.p12	First Pass	NC_000005.10	Chr5	153,286,382	153,286,382	+
nssv17680803	Remapped	Perfect	GRCh38.p12	First Pass	NC_000005.10	Chr5	181,052,109	181,052,109	+
nssv17680803	Submitted genomic		GRCh37 (hg19)		NC_000005.9	Chr5	152,665,942	152,665,942	+
nssv17680803	Submitted genomic		GRCh37 (hg19)		NC_000005.9	Chr5	180,479,109	180,479,109	+

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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