nsv6290511
- Organism: Homo sapiens
- Study:nstd102 (Clinical Structural Variants)
- Variant Type:copy number variation
- Method Type:Multiple
- Submitted on:GRCh37
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: Yes
- Region Size:242,265
- Description:GRCh37/hg19 Xp21.1(chrX:31681369-31923633)x1 AND not provided
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 631 SVs from 50 studies. See in: genome view
Overlapping variant regions from other studies: 631 SVs from 50 studies. See in: genome view
Variant Region Placement Information
Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
---|---|---|---|---|---|---|---|---|---|
nsv6290511 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000023.11 | ChrX | 31,663,252 | 31,905,516 |
nsv6290511 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000023.10 | ChrX | 31,681,369 | 31,923,633 |
Variant Call Information
Variant Call ID | Type | Method | Analysis | Subject Phenotype | Clinical Interpretation | Source of Interpretation | ClinVar ID | Copy number |
---|---|---|---|---|---|---|---|---|
nssv17956784 | copy number loss | Multiple | Multiple | not provided | Pathogenic | ClinVar | RCV001829076.1, VCV001340911.1 | 1 |
Variant Call Placement Information
Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
---|---|---|---|---|---|---|---|---|---|
nssv17956784 | Remapped | Perfect | NC_000023.11:g.(?_ 31663252)_(3190551 6_?)del | GRCh38.p12 | First Pass | NC_000023.11 | ChrX | 31,663,252 | 31,905,516 |
nssv17956784 | Submitted genomic | NC_000023.10:g.(?_ 31681369)_(3192363 3_?)del | GRCh37 (hg19) | NC_000023.10 | ChrX | 31,681,369 | 31,923,633 |
No validation data were submitted for this variant
Clinical Assertions
Variant Call ID | HGVS | Type | Allele Origin | Subject Phenotype | Clinical Interpretation | Source of Interpretation | ClinVar ID | Copy number |
---|---|---|---|---|---|---|---|---|
nssv17956784 | GRCh37: NC_000023.10:g.(?_31681369)_(31923633_?)del | copy number loss | germline | not provided | Pathogenic | ClinVar | RCV001829076.1, VCV001340911.1 | 1 |