nsv6314541
- Organism: Homo sapiens
- Study:nstd102 (Clinical Structural Variants)
- Variant Type:complex chromosomal rearrangement
- Method Type:Multiple
- Submitted on:GRCh37
- Variant Calls:9
- Validation:Not tested
- Clinical Assertions: Yes
- Region Size:1
- Description:
46;XX;ins(5;6)(p13;p24p25)dn AND multiple conditions - Publication(s):Redin et al. 2016
- ClinVar: RCV000258598.2
- ClinVar: VCV000267851.2
- HP: 0000138
- HP: 0000175
- HP: 0000201
- HP: 0001182
- HP: 0001642
- HP: 0001643
- HP: 0001845
- HP: 0001848
- HP: 0001999
- HP: 0003808
- HP: 0005180
- HP: 0010743
- HP: 0012382
- HP: 0012745
- HP: 0100814
- MONDO: 0002870
- MONDO: 0003282
- MONDO: 0006680
- MONDO: 0009869
- MONDO: 0009938
- MONDO: 0011827
- MONDO: 0015319
- MONDO: 0016064
- MedGen: C0013274
- MedGen: C0029927
- MedGen: C0031900
- MedGen: C0040961
- MedGen: C0206736
- MedGen: C0423112
- MedGen: C0424503
- MedGen: C0426886
- MedGen: C0428870
- MedGen: C0852413
- MedGen: C0920299
- MedGen: C1849020
- MedGen: C1860450
- MedGen: C1956257
- MedGen: C2981150
- OMIM: 261800
- OMIM: 265500
- OMIM: 607411
- OMIM: PS607411
- Orphanet: 3189
- Orphanet: 718
- PubMed: 27841880
- Overlapping Genes
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 102 SVs from 24 studies. See in: genome view
Overlapping variant regions from other studies: 103 SVs from 24 studies. See in: genome view
Overlapping variant regions from other studies: 141 SVs from 31 studies. See in: genome view
Overlapping variant regions from other studies: 139 SVs from 29 studies. See in: genome view
Overlapping variant regions from other studies: 86 SVs from 30 studies. See in: genome view
Overlapping variant regions from other studies: 86 SVs from 30 studies. See in: genome view
Overlapping variant regions from other studies: 68 SVs from 17 studies. See in: genome view
Overlapping variant regions from other studies: 68 SVs from 17 studies. See in: genome view
Overlapping variant regions from other studies: 123 SVs from 28 studies. See in: genome view
Overlapping variant regions from other studies: 123 SVs from 28 studies. See in: genome view
Overlapping variant regions from other studies: 82 SVs from 15 studies. See in: genome view
Overlapping variant regions from other studies: 86 SVs from 17 studies. See in: genome view
Overlapping variant regions from other studies: 89 SVs from 16 studies. See in: genome view
Overlapping variant regions from other studies: 89 SVs from 16 studies. See in: genome view
Overlapping variant regions from other studies: 109 SVs from 22 studies. See in: genome view
Overlapping variant regions from other studies: 109 SVs from 22 studies. See in: genome view
Overlapping variant regions from other studies: 115 SVs from 24 studies. See in: genome view
Overlapping variant regions from other studies: 115 SVs from 24 studies. See in: genome view
Overlapping variant regions from other studies: 102 SVs from 24 studies. See in: genome view
Overlapping variant regions from other studies: 103 SVs from 24 studies. See in: genome view
Overlapping variant regions from other studies: 141 SVs from 31 studies. See in: genome view
Overlapping variant regions from other studies: 139 SVs from 29 studies. See in: genome view
Overlapping variant regions from other studies: 86 SVs from 30 studies. See in: genome view
Overlapping variant regions from other studies: 86 SVs from 30 studies. See in: genome view
Overlapping variant regions from other studies: 68 SVs from 17 studies. See in: genome view
Overlapping variant regions from other studies: 68 SVs from 17 studies. See in: genome view
Overlapping variant regions from other studies: 123 SVs from 28 studies. See in: genome view
Overlapping variant regions from other studies: 123 SVs from 28 studies. See in: genome view
Overlapping variant regions from other studies: 82 SVs from 15 studies. See in: genome view
Overlapping variant regions from other studies: 86 SVs from 17 studies. See in: genome view
Overlapping variant regions from other studies: 89 SVs from 16 studies. See in: genome view
Overlapping variant regions from other studies: 89 SVs from 16 studies. See in: genome view
Overlapping variant regions from other studies: 109 SVs from 22 studies. See in: genome view
Overlapping variant regions from other studies: 109 SVs from 22 studies. See in: genome view
Overlapping variant regions from other studies: 115 SVs from 24 studies. See in: genome view
Overlapping variant regions from other studies: 115 SVs from 24 studies. See in: genome view
Variant Region Placement Information
Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop | strand |
---|---|---|---|---|---|---|---|---|---|---|
nsv6314541 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000004.12 | Chr4 | 173,070,559 | 173,070,559 | + |
nsv6314541 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000004.12 | Chr4 | 173,070,823 | 173,070,823 | + |
nsv6314541 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000004.12 | Chr4 | 178,577,686 | 178,577,686 | - |
nsv6314541 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000004.12 | Chr4 | 178,578,753 | 178,578,753 | + |
nsv6314541 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000005.10 | Chr5 | 34,389,381 | 34,389,381 | - |
nsv6314541 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000005.10 | Chr5 | 34,389,386 | 34,389,386 | + |
nsv6314541 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000005.10 | Chr5 | 62,885,458 | 62,885,458 | + |
nsv6314541 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000005.10 | Chr5 | 62,885,470 | 62,885,470 | + |
nsv6314541 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000005.10 | Chr5 | 6,819,211 | 6,819,211 | - |
nsv6314541 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000005.10 | Chr5 | 6,819,217 | 6,819,217 | - |
nsv6314541 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000006.12 | Chr6 | 15,947,409 | 15,947,409 | + |
nsv6314541 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000006.12 | Chr6 | 15,947,418 | 15,947,418 | - |
nsv6314541 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000006.12 | Chr6 | 16,375,711 | 16,375,711 | - |
nsv6314541 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000006.12 | Chr6 | 16,375,711 | 16,375,711 | - |
nsv6314541 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000006.12 | Chr6 | 20,727,182 | 20,727,182 | - |
nsv6314541 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000006.12 | Chr6 | 20,727,190 | 20,727,190 | - |
nsv6314541 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000006.12 | Chr6 | 20,761,020 | 20,761,020 | - |
nsv6314541 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000006.12 | Chr6 | 20,761,058 | 20,761,058 | + |
nsv6314541 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000004.11 | Chr4 | 173,991,710 | 173,991,710 | + | ||
nsv6314541 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000004.11 | Chr4 | 173,991,974 | 173,991,974 | + | ||
nsv6314541 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000004.11 | Chr4 | 179,498,840 | 179,498,840 | - | ||
nsv6314541 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000004.11 | Chr4 | 179,499,907 | 179,499,907 | + | ||
nsv6314541 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000005.9 | Chr5 | 34,389,486 | 34,389,486 | - | ||
nsv6314541 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000005.9 | Chr5 | 34,389,491 | 34,389,491 | + | ||
nsv6314541 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000005.9 | Chr5 | 62,181,285 | 62,181,285 | + | ||
nsv6314541 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000005.9 | Chr5 | 62,181,297 | 62,181,297 | + | ||
nsv6314541 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000005.9 | Chr5 | 6,819,324 | 6,819,324 | - | ||
nsv6314541 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000005.9 | Chr5 | 6,819,330 | 6,819,330 | - | ||
nsv6314541 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000006.11 | Chr6 | 15,947,640 | 15,947,640 | + | ||
nsv6314541 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000006.11 | Chr6 | 15,947,649 | 15,947,649 | - | ||
nsv6314541 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000006.11 | Chr6 | 16,375,942 | 16,375,942 | - | ||
nsv6314541 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000006.11 | Chr6 | 16,375,942 | 16,375,942 | - | ||
nsv6314541 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000006.11 | Chr6 | 20,727,413 | 20,727,413 | - | ||
nsv6314541 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000006.11 | Chr6 | 20,727,421 | 20,727,421 | - | ||
nsv6314541 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000006.11 | Chr6 | 20,761,251 | 20,761,251 | - | ||
nsv6314541 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000006.11 | Chr6 | 20,761,289 | 20,761,289 | + |
Variant Call Information
Variant Call Placement Information
Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop | strand |
---|---|---|---|---|---|---|---|---|---|---|
nssv17975441 | Remapped | Perfect | NC_000004.12:g.178 578753delNC_000004 .12:g.173070559del | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 173,070,559 | 173,070,559 | |
nssv17975431 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 173,070,823 | 173,070,823 | + | |
nssv17975440 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 178,577,686 | 178,577,686 | - | |
nssv17975441 | Remapped | Perfect | NC_000004.12:g.178 578753delNC_000004 .12:g.173070559del | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 178,578,753 | 178,578,753 | |
nssv17975434 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000005.10 | Chr5 | 6,819,211 | 6,819,211 | - | |
nssv17975431 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000005.10 | Chr5 | 6,819,217 | 6,819,217 | - | |
nssv17975433 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000005.10 | Chr5 | 34,389,381 | 34,389,381 | - | |
nssv17975435 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000005.10 | Chr5 | 34,389,386 | 34,389,386 | + | |
nssv17975436 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000005.10 | Chr5 | 62,885,458 | 62,885,458 | + | |
nssv17975439 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000005.10 | Chr5 | 62,885,470 | 62,885,470 | + | |
nssv17975432 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 15,947,409 | 15,947,409 | + | |
nssv17975433 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 15,947,418 | 15,947,418 | - | |
nssv17975432 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 16,375,711 | 16,375,711 | - | |
nssv17975435 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 16,375,711 | 16,375,711 | - | |
nssv17975434 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 20,727,182 | 20,727,182 | - | |
nssv17975439 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 20,727,190 | 20,727,190 | - | |
nssv17975436 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 20,761,020 | 20,761,020 | - | |
nssv17975440 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 20,761,058 | 20,761,058 | + | |
nssv17975441 | Submitted genomic | NC_000004.11:g.173 991710delNC_000004 .11:g.179499907del | GRCh37 (hg19) | NC_000004.11 | Chr4 | 173,991,710 | 173,991,710 | |||
nssv17975431 | Submitted genomic | GRCh37 (hg19) | NC_000004.11 | Chr4 | 173,991,974 | 173,991,974 | + | |||
nssv17975440 | Submitted genomic | GRCh37 (hg19) | NC_000004.11 | Chr4 | 179,498,840 | 179,498,840 | - | |||
nssv17975441 | Submitted genomic | NC_000004.11:g.173 991710delNC_000004 .11:g.179499907del | GRCh37 (hg19) | NC_000004.11 | Chr4 | 179,499,907 | 179,499,907 | |||
nssv17975434 | Submitted genomic | GRCh37 (hg19) | NC_000005.9 | Chr5 | 6,819,324 | 6,819,324 | - | |||
nssv17975431 | Submitted genomic | GRCh37 (hg19) | NC_000005.9 | Chr5 | 6,819,330 | 6,819,330 | - | |||
nssv17975433 | Submitted genomic | GRCh37 (hg19) | NC_000005.9 | Chr5 | 34,389,486 | 34,389,486 | - | |||
nssv17975435 | Submitted genomic | GRCh37 (hg19) | NC_000005.9 | Chr5 | 34,389,491 | 34,389,491 | + | |||
nssv17975436 | Submitted genomic | GRCh37 (hg19) | NC_000005.9 | Chr5 | 62,181,285 | 62,181,285 | + | |||
nssv17975439 | Submitted genomic | GRCh37 (hg19) | NC_000005.9 | Chr5 | 62,181,297 | 62,181,297 | + | |||
nssv17975432 | Submitted genomic | GRCh37 (hg19) | NC_000006.11 | Chr6 | 15,947,640 | 15,947,640 | + | |||
nssv17975433 | Submitted genomic | GRCh37 (hg19) | NC_000006.11 | Chr6 | 15,947,649 | 15,947,649 | - | |||
nssv17975432 | Submitted genomic | GRCh37 (hg19) | NC_000006.11 | Chr6 | 16,375,942 | 16,375,942 | - | |||
nssv17975435 | Submitted genomic | GRCh37 (hg19) | NC_000006.11 | Chr6 | 16,375,942 | 16,375,942 | - | |||
nssv17975434 | Submitted genomic | GRCh37 (hg19) | NC_000006.11 | Chr6 | 20,727,413 | 20,727,413 | - | |||
nssv17975439 | Submitted genomic | GRCh37 (hg19) | NC_000006.11 | Chr6 | 20,727,421 | 20,727,421 | - | |||
nssv17975436 | Submitted genomic | GRCh37 (hg19) | NC_000006.11 | Chr6 | 20,761,251 | 20,761,251 | - | |||
nssv17975440 | Submitted genomic | GRCh37 (hg19) | NC_000006.11 | Chr6 | 20,761,289 | 20,761,289 | + |