nsv6314784
- Organism: Homo sapiens
- Study:nstd220 (Chen et al. 2022)
- Variant Type:copy number variation
- Method Type:Sequencing
- Submitted on:GRCh37
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:1,285,825
- Publication(s):Chen et al. 2022
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 4901 SVs from 113 studies. See in: genome view
Overlapping variant regions from other studies: 2845 SVs from 91 studies. See in: genome view
Overlapping variant regions from other studies: 4903 SVs from 113 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|
| nsv6314784 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000016.10 | Chr16 | 15,048,956 | - | 16,334,780 |
| nsv6314784 | Remapped | Pass | GRCh38.p12 | ALT_REF_LOCI_1 | Second Pass | NT_187607.1 | Chr16|NT_1 87607.1 | - | 1,015,619 | 1,993,961 |
| nsv6314784 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000016.9 | Chr16 | 15,142,813 | - | 16,428,637 |
Variant Call Information
| Variant Call ID | Type | Method | Analysis |
|---|---|---|---|
| nssv17976215 | copy number loss | Sequencing | Read depth |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|
| nssv17976215 | Remapped | Pass | NT_187607.1:g.(?_1 015619)_(?_1993961 )del | GRCh38.p12 | Second Pass | NT_187607.1 | Chr16|NT_1 87607.1 | - | 1,015,619 | 1,993,961 |
| nssv17976215 | Remapped | Perfect | NC_000016.10:g.(15 048956_?)_(?_16334 780)del | GRCh38.p12 | First Pass | NC_000016.10 | Chr16 | 15,048,956 | - | 16,334,780 |
| nssv17976215 | Submitted genomic | NC_000016.9:g.(151 42813_?)_(?_164286 37)del | GRCh37 (hg19) | NC_000016.9 | Chr16 | 15,142,813 | - | 16,428,637 |