nsv6620355
- Organism: Homo sapiens
- Study:nstd224 (Zarrei et al. 2023)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:GRCh37
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:155,422
- Publication(s):Zarrei et al. 2023
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 852 SVs from 84 studies. See in: genome view
Overlapping variant regions from other studies: 590 SVs from 67 studies. See in: genome view
Overlapping variant regions from other studies: 852 SVs from 84 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv6620355 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000010.11 | Chr10 | 27,305,967 | 27,414,088 |
| nsv6620355 | Remapped | Pass | GRCh38.p12 | ALT_REF_LOCI_1 | Second Pass | NW_003315934.1 | Chr10|NW_0 03315934.1 | 20,313 | 175,734 |
| nsv6620355 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000010.10 | Chr10 | 27,594,896 | 27,703,017 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv18284236 | deletion | OSC2574 | SNP array | Probe signal intensity | nssv18284836, nssv18285174, nssv18285175 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv18284236 | Remapped | Pass | NW_003315934.1:g.( ?_20313)_(175734_? )del | GRCh38.p12 | Second Pass | NW_003315934.1 | Chr10|NW_0 03315934.1 | 20,313 | 175,734 |
| nssv18284236 | Remapped | Perfect | NC_000010.11:g.(?_ 27305967)_(2741408 8_?)del | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 27,305,967 | 27,414,088 |
| nssv18284236 | Submitted genomic | NC_000010.10:g.(?_ 27594896)_(2770301 7_?)del | GRCh37 (hg19) | NC_000010.10 | Chr10 | 27,594,896 | 27,703,017 |