nsv6623035
- Organism: Homo sapiens
- Study:nstd224 (Zarrei et al. 2023)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:GRCh37
- Variant Calls:23
- Validation:Not tested
- Clinical Assertions: No
- Region Size:33,228
- Publication(s):Zarrei et al. 2023
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 3541 SVs from 91 studies. See in: genome view
Overlapping variant regions from other studies: 3616 SVs from 93 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv6623035 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000015.10 | Chr15 | 22,094,903 | 22,128,130 |
| nsv6623035 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000015.9 | Chr15 | 22,382,854 | 22,416,081 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv18283882 | deletion | OSC2333 | SNP array | Probe signal intensity | nssv18283884, nssv18283598, nssv18282966 |
| nssv18283890 | deletion | OSC2340 | SNP array | Probe signal intensity | 5 |
| nssv18284458 | duplication | OSC2564 | SNP array | Probe signal intensity | 8 |
| nssv18285036 | deletion | OSC2486 | SNP array | Probe signal intensity | 8 |
| nssv18287577 | deletion | OSC2993 | SNP array | Probe signal intensity | 8 |
| nssv18287643 | duplication | OSC3038 | SNP array | Probe signal intensity | 6 |
| nssv18287751 | deletion | OSC3110 | SNP array | Probe signal intensity | nssv18287752, nssv18287426, nssv18287753 |
| nssv18288096 | deletion | OSC3166 | SNP array | Probe signal intensity | 8 |
| nssv18289523 | duplication | OSC3526 | SNP array | Probe signal intensity | nssv18289524, nssv18290166 |
| nssv18289924 | duplication | OSC3568 | SNP array | Probe signal intensity | 9 |
| nssv18290387 | duplication | OSC3642 | SNP array | Probe signal intensity | 6 |
| nssv18298469 | deletion | OSC5075 | SNP array | Probe signal intensity | 8 |
| nssv18299077 | deletion | OSC5270 | SNP array | Probe signal intensity | 7 |
| nssv18299642 | deletion | OSC5247 | SNP array | Probe signal intensity | nssv18299933, nssv18299934, nssv18299935 |
| nssv18305433 | deletion | OSC0662 | SNP array | Probe signal intensity | 5 |
| nssv18308646 | duplication | OSC0721 | SNP array | Probe signal intensity | 6 |
| nssv18310588 | duplication | OSC0076 | SNP array | Probe signal intensity | 6 |
| nssv18320332 | deletion | OSC0987 | SNP array | Probe signal intensity | 10 |
| nssv18321408 | deletion | OSC0109 | SNP array | Probe signal intensity | 6 |
| nssv18321704 | duplication | OSC1142 | SNP array | Probe signal intensity | 5 |
| nssv18324330 | deletion | OSC1677 | SNP array | Probe signal intensity | 5 |
| nssv18324964 | deletion | OSC1920 | SNP array | Probe signal intensity | nssv18324963, nssv18324962 |
| nssv18325923 | deletion | OSC1956 | SNP array | Probe signal intensity | 8 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv18283882 | Remapped | Perfect | NC_000015.10:g.(?_ 22094903)_(2212813 0_?)del | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 22,094,903 | 22,128,130 |
| nssv18283890 | Remapped | Perfect | NC_000015.10:g.(?_ 22094903)_(2212813 0_?)del | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 22,094,903 | 22,128,130 |
| nssv18284458 | Remapped | Perfect | NC_000015.10:g.(?_ 22094903)_(2212813 0_?)dup | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 22,094,903 | 22,128,130 |
| nssv18285036 | Remapped | Perfect | NC_000015.10:g.(?_ 22094903)_(2212813 0_?)del | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 22,094,903 | 22,128,130 |
| nssv18287577 | Remapped | Perfect | NC_000015.10:g.(?_ 22094903)_(2212813 0_?)del | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 22,094,903 | 22,128,130 |
| nssv18287643 | Remapped | Perfect | NC_000015.10:g.(?_ 22094903)_(2212813 0_?)dup | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 22,094,903 | 22,128,130 |
| nssv18287751 | Remapped | Perfect | NC_000015.10:g.(?_ 22094903)_(2212813 0_?)del | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 22,094,903 | 22,128,130 |
| nssv18288096 | Remapped | Perfect | NC_000015.10:g.(?_ 22094903)_(2212813 0_?)del | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 22,094,903 | 22,128,130 |
| nssv18289523 | Remapped | Perfect | NC_000015.10:g.(?_ 22094903)_(2212813 0_?)dup | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 22,094,903 | 22,128,130 |
| nssv18289924 | Remapped | Perfect | NC_000015.10:g.(?_ 22094903)_(2212813 0_?)dup | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 22,094,903 | 22,128,130 |
| nssv18290387 | Remapped | Perfect | NC_000015.10:g.(?_ 22094903)_(2212813 0_?)dup | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 22,094,903 | 22,128,130 |
| nssv18298469 | Remapped | Perfect | NC_000015.10:g.(?_ 22094903)_(2212813 0_?)del | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 22,094,903 | 22,128,130 |
| nssv18299077 | Remapped | Perfect | NC_000015.10:g.(?_ 22094903)_(2212813 0_?)del | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 22,094,903 | 22,128,130 |
| nssv18299642 | Remapped | Perfect | NC_000015.10:g.(?_ 22094903)_(2212813 0_?)del | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 22,094,903 | 22,128,130 |
| nssv18305433 | Remapped | Perfect | NC_000015.10:g.(?_ 22094903)_(2212813 0_?)del | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 22,094,903 | 22,128,130 |
| nssv18308646 | Remapped | Perfect | NC_000015.10:g.(?_ 22094903)_(2212813 0_?)dup | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 22,094,903 | 22,128,130 |
| nssv18310588 | Remapped | Perfect | NC_000015.10:g.(?_ 22094903)_(2212813 0_?)dup | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 22,094,903 | 22,128,130 |
| nssv18320332 | Remapped | Perfect | NC_000015.10:g.(?_ 22094903)_(2212813 0_?)del | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 22,094,903 | 22,128,130 |
| nssv18321408 | Remapped | Perfect | NC_000015.10:g.(?_ 22094903)_(2212813 0_?)del | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 22,094,903 | 22,128,130 |
| nssv18321704 | Remapped | Perfect | NC_000015.10:g.(?_ 22094903)_(2212813 0_?)dup | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 22,094,903 | 22,128,130 |
| nssv18324330 | Remapped | Perfect | NC_000015.10:g.(?_ 22094903)_(2212813 0_?)del | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 22,094,903 | 22,128,130 |
| nssv18324964 | Remapped | Perfect | NC_000015.10:g.(?_ 22094903)_(2212813 0_?)del | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 22,094,903 | 22,128,130 |
| nssv18325923 | Remapped | Perfect | NC_000015.10:g.(?_ 22094903)_(2212813 0_?)del | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 22,094,903 | 22,128,130 |
| nssv18283882 | Submitted genomic | NC_000015.9:g.(?_2 2382854)_(22416081 _?)del | GRCh37 (hg19) | NC_000015.9 | Chr15 | 22,382,854 | 22,416,081 | ||
| nssv18283890 | Submitted genomic | NC_000015.9:g.(?_2 2382854)_(22416081 _?)del | GRCh37 (hg19) | NC_000015.9 | Chr15 | 22,382,854 | 22,416,081 | ||
| nssv18284458 | Submitted genomic | NC_000015.9:g.(?_2 2382854)_(22416081 _?)dup | GRCh37 (hg19) | NC_000015.9 | Chr15 | 22,382,854 | 22,416,081 | ||
| nssv18285036 | Submitted genomic | NC_000015.9:g.(?_2 2382854)_(22416081 _?)del | GRCh37 (hg19) | NC_000015.9 | Chr15 | 22,382,854 | 22,416,081 | ||
| nssv18287577 | Submitted genomic | NC_000015.9:g.(?_2 2382854)_(22416081 _?)del | GRCh37 (hg19) | NC_000015.9 | Chr15 | 22,382,854 | 22,416,081 | ||
| nssv18287643 | Submitted genomic | NC_000015.9:g.(?_2 2382854)_(22416081 _?)dup | GRCh37 (hg19) | NC_000015.9 | Chr15 | 22,382,854 | 22,416,081 | ||
| nssv18287751 | Submitted genomic | NC_000015.9:g.(?_2 2382854)_(22416081 _?)del | GRCh37 (hg19) | NC_000015.9 | Chr15 | 22,382,854 | 22,416,081 | ||
| nssv18288096 | Submitted genomic | NC_000015.9:g.(?_2 2382854)_(22416081 _?)del | GRCh37 (hg19) | NC_000015.9 | Chr15 | 22,382,854 | 22,416,081 | ||
| nssv18289523 | Submitted genomic | NC_000015.9:g.(?_2 2382854)_(22416081 _?)dup | GRCh37 (hg19) | NC_000015.9 | Chr15 | 22,382,854 | 22,416,081 | ||
| nssv18289924 | Submitted genomic | NC_000015.9:g.(?_2 2382854)_(22416081 _?)dup | GRCh37 (hg19) | NC_000015.9 | Chr15 | 22,382,854 | 22,416,081 | ||
| nssv18290387 | Submitted genomic | NC_000015.9:g.(?_2 2382854)_(22416081 _?)dup | GRCh37 (hg19) | NC_000015.9 | Chr15 | 22,382,854 | 22,416,081 | ||
| nssv18298469 | Submitted genomic | NC_000015.9:g.(?_2 2382854)_(22416081 _?)del | GRCh37 (hg19) | NC_000015.9 | Chr15 | 22,382,854 | 22,416,081 | ||
| nssv18299077 | Submitted genomic | NC_000015.9:g.(?_2 2382854)_(22416081 _?)del | GRCh37 (hg19) | NC_000015.9 | Chr15 | 22,382,854 | 22,416,081 | ||
| nssv18299642 | Submitted genomic | NC_000015.9:g.(?_2 2382854)_(22416081 _?)del | GRCh37 (hg19) | NC_000015.9 | Chr15 | 22,382,854 | 22,416,081 | ||
| nssv18305433 | Submitted genomic | NC_000015.9:g.(?_2 2382854)_(22416081 _?)del | GRCh37 (hg19) | NC_000015.9 | Chr15 | 22,382,854 | 22,416,081 | ||
| nssv18308646 | Submitted genomic | NC_000015.9:g.(?_2 2382854)_(22416081 _?)dup | GRCh37 (hg19) | NC_000015.9 | Chr15 | 22,382,854 | 22,416,081 | ||
| nssv18310588 | Submitted genomic | NC_000015.9:g.(?_2 2382854)_(22416081 _?)dup | GRCh37 (hg19) | NC_000015.9 | Chr15 | 22,382,854 | 22,416,081 | ||
| nssv18320332 | Submitted genomic | NC_000015.9:g.(?_2 2382854)_(22416081 _?)del | GRCh37 (hg19) | NC_000015.9 | Chr15 | 22,382,854 | 22,416,081 | ||
| nssv18321408 | Submitted genomic | NC_000015.9:g.(?_2 2382854)_(22416081 _?)del | GRCh37 (hg19) | NC_000015.9 | Chr15 | 22,382,854 | 22,416,081 | ||
| nssv18321704 | Submitted genomic | NC_000015.9:g.(?_2 2382854)_(22416081 _?)dup | GRCh37 (hg19) | NC_000015.9 | Chr15 | 22,382,854 | 22,416,081 | ||
| nssv18324330 | Submitted genomic | NC_000015.9:g.(?_2 2382854)_(22416081 _?)del | GRCh37 (hg19) | NC_000015.9 | Chr15 | 22,382,854 | 22,416,081 | ||
| nssv18324964 | Submitted genomic | NC_000015.9:g.(?_2 2382854)_(22416081 _?)del | GRCh37 (hg19) | NC_000015.9 | Chr15 | 22,382,854 | 22,416,081 | ||
| nssv18325923 | Submitted genomic | NC_000015.9:g.(?_2 2382854)_(22416081 _?)del | GRCh37 (hg19) | NC_000015.9 | Chr15 | 22,382,854 | 22,416,081 |