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dbVar

Database of genomic structural variation

nsv6625364

Organism: Homo sapiens

Study:nstd224 (Zarrei et al. 2023)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:GRCh37

Variant Calls:3
Validation:Not tested
Clinical Assertions: No
Region Size:33,984

Publication(s):Zarrei et al. 2023

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 1322 SVs from 92 studies. See in: genome view

Remapped(Score: Good):12,827,473-12,861,456

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv6625364	Remapped	Good	GRCh38.p12	Primary Assembly	First Pass	NC_000001.11	Chr1	12,827,473	12,861,456
nsv6625364	Remapped	Good	GRCh38.p12	PATCHES	Second Pass	NW_012132914.1	Chr1\|NW_01 2132914.1	8,986	42,969
nsv6625364	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000001.10	Chr1	12,887,332	12,921,311

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv18283777	deletion	OSC2263	SNP array	Probe signal intensity	9
nssv18283822	deletion	OSC2301	SNP array	Probe signal intensity	10
nssv18299266	deletion	OSC5221	SNP array	Probe signal intensity	6

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv18283777	Remapped	Good	NW_012132914.1:g.( ?_8986)_(42969_?)d el	GRCh38.p12	Second Pass	NW_012132914.1	Chr1\|NW_01 2132914.1	8,986	42,969
nssv18283822	Remapped	Good	NW_012132914.1:g.( ?_8986)_(42969_?)d el	GRCh38.p12	Second Pass	NW_012132914.1	Chr1\|NW_01 2132914.1	8,986	42,969
nssv18299266	Remapped	Good	NW_012132914.1:g.( ?_8986)_(42969_?)d el	GRCh38.p12	Second Pass	NW_012132914.1	Chr1\|NW_01 2132914.1	8,986	42,969
nssv18283777	Remapped	Good	NC_000001.11:g.(?_ 12827473)_(1286145 6_?)del	GRCh38.p12	First Pass	NC_000001.11	Chr1	12,827,473	12,861,456
nssv18283822	Remapped	Good	NC_000001.11:g.(?_ 12827473)_(1286145 6_?)del	GRCh38.p12	First Pass	NC_000001.11	Chr1	12,827,473	12,861,456
nssv18299266	Remapped	Good	NC_000001.11:g.(?_ 12827473)_(1286145 6_?)del	GRCh38.p12	First Pass	NC_000001.11	Chr1	12,827,473	12,861,456
nssv18283777	Submitted genomic		NC_000001.10:g.(?_ 12887332)_(1292131 1_?)del	GRCh37 (hg19)		NC_000001.10	Chr1	12,887,332	12,921,311
nssv18283822	Submitted genomic		NC_000001.10:g.(?_ 12887332)_(1292131 1_?)del	GRCh37 (hg19)		NC_000001.10	Chr1	12,887,332	12,921,311
nssv18299266	Submitted genomic		NC_000001.10:g.(?_ 12887332)_(1292131 1_?)del	GRCh37 (hg19)		NC_000001.10	Chr1	12,887,332	12,921,311

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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