nsv6625408
- Organism: Homo sapiens
- Study:nstd224 (Zarrei et al. 2023)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:GRCh37
- Variant Calls:2
- Validation:Not tested
- Clinical Assertions: No
- Region Size:78,603
- Publication(s):Zarrei et al. 2023
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 237 SVs from 43 studies. See in: genome view
Overlapping variant regions from other studies: 243 SVs from 44 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv6625408 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000001.11 | Chr1 | 157,306,487 | 157,385,089 |
| nsv6625408 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000001.10 | Chr1 | 157,276,277 | 157,354,879 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv18286308 | duplication | OSC2726 | SNP array | Probe signal intensity | nssv18286310, nssv18286311, nssv18285394 |
| nssv18326034 | duplication | OSC1946 | SNP array | Probe signal intensity | 8 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv18286308 | Remapped | Perfect | NC_000001.11:g.(?_ 157306487)_(157385 089_?)dup | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 157,306,487 | 157,385,089 |
| nssv18326034 | Remapped | Perfect | NC_000001.11:g.(?_ 157306487)_(157385 089_?)dup | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 157,306,487 | 157,385,089 |
| nssv18286308 | Submitted genomic | NC_000001.10:g.(?_ 157276277)_(157354 879_?)dup | GRCh37 (hg19) | NC_000001.10 | Chr1 | 157,276,277 | 157,354,879 | ||
| nssv18326034 | Submitted genomic | NC_000001.10:g.(?_ 157276277)_(157354 879_?)dup | GRCh37 (hg19) | NC_000001.10 | Chr1 | 157,276,277 | 157,354,879 |