nsv6625424

Organism: Homo sapiens

Study:nstd224 (Zarrei et al. 2023)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:GRCh37

Variant Calls:26
Validation:Not tested
Clinical Assertions: No
Region Size:77,982

Publication(s):Zarrei et al. 2023

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 758 SVs from 80 studies. See in: genome view

Remapped(Score: Good):53,429,042-53,507,023

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv6625424	Remapped	Good	GRCh38.p12	Primary Assembly	First Pass	NC_000019.10	Chr19	53,429,042	53,507,023
nsv6625424	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000019.9	Chr19	53,932,295	54,010,277

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv18281761	deletion	OSC2132	SNP array	Probe signal intensity	6
nssv18281788	duplication	OSC2157	SNP array	Probe signal intensity	5
nssv18285095	duplication	OSC2521	SNP array	Probe signal intensity	7
nssv18285642	duplication	OSC2748	SNP array	Probe signal intensity	nssv18285643, nssv18286330, nssv18286331
nssv18285694	duplication	OSC2794	SNP array	Probe signal intensity	nssv18285483, nssv18286072, nssv18286073
nssv18286981	duplication	OSC3050	SNP array	Probe signal intensity	7
nssv18287633	duplication	OSC3030	SNP array	Probe signal intensity	9
nssv18289627	duplication	OSC3592	SNP array	Probe signal intensity	7
nssv18292392	duplication	OSC3999	SNP array	Probe signal intensity	5
nssv18293150	duplication	OSC4131	SNP array	Probe signal intensity	8
nssv18293225	duplication	OSC4184	SNP array	Probe signal intensity	8
nssv18296239	duplication	OSC4552	SNP array	Probe signal intensity	nssv18295343, nssv18295899
nssv18297407	duplication	OSC4729	SNP array	Probe signal intensity	5
nssv18297462	duplication	OSC4766	SNP array	Probe signal intensity	6
nssv18297779	duplication	OSC4991	SNP array	Probe signal intensity	nssv18298681, nssv18298680, nssv18297778
nssv18298842	duplication	OSC5116	SNP array	Probe signal intensity	nssv18298522, nssv18298878
nssv18299565	duplication	OSC5196	SNP array	Probe signal intensity	7
nssv18302359	duplication	OSC5698	SNP array	Probe signal intensity	6
nssv18315374	duplication	OSC8071	SNP array	Probe signal intensity	8
nssv18317210	duplication	OSC0871	SNP array	Probe signal intensity	nssv18317206, nssv18316969, nssv18316716
nssv18318668	duplication	OSC0903	SNP array	Probe signal intensity	8
nssv18320234	duplication	OSC0925	SNP array	Probe signal intensity	13
nssv18320352	duplication	OSC0996	SNP array	Probe signal intensity	nssv18320605, nssv18320353
nssv18321115	deletion	OSC1165	SNP array	Probe signal intensity	5
nssv18321291	duplication	OSC1277	SNP array	Probe signal intensity	6
nssv18324243	duplication	OSC1617	SNP array	Probe signal intensity	nssv18323962, nssv18324526, nssv18324527

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv18281761	Remapped	Good	NC_000019.10:g.(?_ 53429042)_(5350702 3_?)del	GRCh38.p12	First Pass	NC_000019.10	Chr19	53,429,042	53,507,023
nssv18281788	Remapped	Good	NC_000019.10:g.(?_ 53429042)_(5350702 3_?)dup	GRCh38.p12	First Pass	NC_000019.10	Chr19	53,429,042	53,507,023
nssv18285095	Remapped	Good	NC_000019.10:g.(?_ 53429042)_(5350702 3_?)dup	GRCh38.p12	First Pass	NC_000019.10	Chr19	53,429,042	53,507,023
nssv18285642	Remapped	Good	NC_000019.10:g.(?_ 53429042)_(5350702 3_?)dup	GRCh38.p12	First Pass	NC_000019.10	Chr19	53,429,042	53,507,023
nssv18285694	Remapped	Good	NC_000019.10:g.(?_ 53429042)_(5350702 3_?)dup	GRCh38.p12	First Pass	NC_000019.10	Chr19	53,429,042	53,507,023
nssv18286981	Remapped	Good	NC_000019.10:g.(?_ 53429042)_(5350702 3_?)dup	GRCh38.p12	First Pass	NC_000019.10	Chr19	53,429,042	53,507,023
nssv18287633	Remapped	Good	NC_000019.10:g.(?_ 53429042)_(5350702 3_?)dup	GRCh38.p12	First Pass	NC_000019.10	Chr19	53,429,042	53,507,023
nssv18289627	Remapped	Good	NC_000019.10:g.(?_ 53429042)_(5350702 3_?)dup	GRCh38.p12	First Pass	NC_000019.10	Chr19	53,429,042	53,507,023
nssv18292392	Remapped	Good	NC_000019.10:g.(?_ 53429042)_(5350702 3_?)dup	GRCh38.p12	First Pass	NC_000019.10	Chr19	53,429,042	53,507,023
nssv18293150	Remapped	Good	NC_000019.10:g.(?_ 53429042)_(5350702 3_?)dup	GRCh38.p12	First Pass	NC_000019.10	Chr19	53,429,042	53,507,023
nssv18293225	Remapped	Good	NC_000019.10:g.(?_ 53429042)_(5350702 3_?)dup	GRCh38.p12	First Pass	NC_000019.10	Chr19	53,429,042	53,507,023
nssv18296239	Remapped	Good	NC_000019.10:g.(?_ 53429042)_(5350702 3_?)dup	GRCh38.p12	First Pass	NC_000019.10	Chr19	53,429,042	53,507,023
nssv18297407	Remapped	Good	NC_000019.10:g.(?_ 53429042)_(5350702 3_?)dup	GRCh38.p12	First Pass	NC_000019.10	Chr19	53,429,042	53,507,023
nssv18297462	Remapped	Good	NC_000019.10:g.(?_ 53429042)_(5350702 3_?)dup	GRCh38.p12	First Pass	NC_000019.10	Chr19	53,429,042	53,507,023
nssv18297779	Remapped	Good	NC_000019.10:g.(?_ 53429042)_(5350702 3_?)dup	GRCh38.p12	First Pass	NC_000019.10	Chr19	53,429,042	53,507,023
nssv18298842	Remapped	Good	NC_000019.10:g.(?_ 53429042)_(5350702 3_?)dup	GRCh38.p12	First Pass	NC_000019.10	Chr19	53,429,042	53,507,023
nssv18299565	Remapped	Good	NC_000019.10:g.(?_ 53429042)_(5350702 3_?)dup	GRCh38.p12	First Pass	NC_000019.10	Chr19	53,429,042	53,507,023
nssv18302359	Remapped	Good	NC_000019.10:g.(?_ 53429042)_(5350702 3_?)dup	GRCh38.p12	First Pass	NC_000019.10	Chr19	53,429,042	53,507,023
nssv18315374	Remapped	Good	NC_000019.10:g.(?_ 53429042)_(5350702 3_?)dup	GRCh38.p12	First Pass	NC_000019.10	Chr19	53,429,042	53,507,023
nssv18317210	Remapped	Good	NC_000019.10:g.(?_ 53429042)_(5350702 3_?)dup	GRCh38.p12	First Pass	NC_000019.10	Chr19	53,429,042	53,507,023
nssv18318668	Remapped	Good	NC_000019.10:g.(?_ 53429042)_(5350702 3_?)dup	GRCh38.p12	First Pass	NC_000019.10	Chr19	53,429,042	53,507,023
nssv18320234	Remapped	Good	NC_000019.10:g.(?_ 53429042)_(5350702 3_?)dup	GRCh38.p12	First Pass	NC_000019.10	Chr19	53,429,042	53,507,023
nssv18320352	Remapped	Good	NC_000019.10:g.(?_ 53429042)_(5350702 3_?)dup	GRCh38.p12	First Pass	NC_000019.10	Chr19	53,429,042	53,507,023
nssv18321115	Remapped	Good	NC_000019.10:g.(?_ 53429042)_(5350702 3_?)del	GRCh38.p12	First Pass	NC_000019.10	Chr19	53,429,042	53,507,023
nssv18321291	Remapped	Good	NC_000019.10:g.(?_ 53429042)_(5350702 3_?)dup	GRCh38.p12	First Pass	NC_000019.10	Chr19	53,429,042	53,507,023
nssv18324243	Remapped	Good	NC_000019.10:g.(?_ 53429042)_(5350702 3_?)dup	GRCh38.p12	First Pass	NC_000019.10	Chr19	53,429,042	53,507,023
nssv18281761	Submitted genomic		NC_000019.9:g.(?_5 3932295)_(54010277 _?)del	GRCh37 (hg19)		NC_000019.9	Chr19	53,932,295	54,010,277
nssv18281788	Submitted genomic		NC_000019.9:g.(?_5 3932295)_(54010277 _?)dup	GRCh37 (hg19)		NC_000019.9	Chr19	53,932,295	54,010,277
nssv18285095	Submitted genomic		NC_000019.9:g.(?_5 3932295)_(54010277 _?)dup	GRCh37 (hg19)		NC_000019.9	Chr19	53,932,295	54,010,277
nssv18285642	Submitted genomic		NC_000019.9:g.(?_5 3932295)_(54010277 _?)dup	GRCh37 (hg19)		NC_000019.9	Chr19	53,932,295	54,010,277
nssv18285694	Submitted genomic		NC_000019.9:g.(?_5 3932295)_(54010277 _?)dup	GRCh37 (hg19)		NC_000019.9	Chr19	53,932,295	54,010,277
nssv18286981	Submitted genomic		NC_000019.9:g.(?_5 3932295)_(54010277 _?)dup	GRCh37 (hg19)		NC_000019.9	Chr19	53,932,295	54,010,277
nssv18287633	Submitted genomic		NC_000019.9:g.(?_5 3932295)_(54010277 _?)dup	GRCh37 (hg19)		NC_000019.9	Chr19	53,932,295	54,010,277
nssv18289627	Submitted genomic		NC_000019.9:g.(?_5 3932295)_(54010277 _?)dup	GRCh37 (hg19)		NC_000019.9	Chr19	53,932,295	54,010,277
nssv18292392	Submitted genomic		NC_000019.9:g.(?_5 3932295)_(54010277 _?)dup	GRCh37 (hg19)		NC_000019.9	Chr19	53,932,295	54,010,277
nssv18293150	Submitted genomic		NC_000019.9:g.(?_5 3932295)_(54010277 _?)dup	GRCh37 (hg19)		NC_000019.9	Chr19	53,932,295	54,010,277
nssv18293225	Submitted genomic		NC_000019.9:g.(?_5 3932295)_(54010277 _?)dup	GRCh37 (hg19)		NC_000019.9	Chr19	53,932,295	54,010,277
nssv18296239	Submitted genomic		NC_000019.9:g.(?_5 3932295)_(54010277 _?)dup	GRCh37 (hg19)		NC_000019.9	Chr19	53,932,295	54,010,277
nssv18297407	Submitted genomic		NC_000019.9:g.(?_5 3932295)_(54010277 _?)dup	GRCh37 (hg19)		NC_000019.9	Chr19	53,932,295	54,010,277
nssv18297462	Submitted genomic		NC_000019.9:g.(?_5 3932295)_(54010277 _?)dup	GRCh37 (hg19)		NC_000019.9	Chr19	53,932,295	54,010,277
nssv18297779	Submitted genomic		NC_000019.9:g.(?_5 3932295)_(54010277 _?)dup	GRCh37 (hg19)		NC_000019.9	Chr19	53,932,295	54,010,277
nssv18298842	Submitted genomic		NC_000019.9:g.(?_5 3932295)_(54010277 _?)dup	GRCh37 (hg19)		NC_000019.9	Chr19	53,932,295	54,010,277
nssv18299565	Submitted genomic		NC_000019.9:g.(?_5 3932295)_(54010277 _?)dup	GRCh37 (hg19)		NC_000019.9	Chr19	53,932,295	54,010,277
nssv18302359	Submitted genomic		NC_000019.9:g.(?_5 3932295)_(54010277 _?)dup	GRCh37 (hg19)		NC_000019.9	Chr19	53,932,295	54,010,277
nssv18315374	Submitted genomic		NC_000019.9:g.(?_5 3932295)_(54010277 _?)dup	GRCh37 (hg19)		NC_000019.9	Chr19	53,932,295	54,010,277
nssv18317210	Submitted genomic		NC_000019.9:g.(?_5 3932295)_(54010277 _?)dup	GRCh37 (hg19)		NC_000019.9	Chr19	53,932,295	54,010,277
nssv18318668	Submitted genomic		NC_000019.9:g.(?_5 3932295)_(54010277 _?)dup	GRCh37 (hg19)		NC_000019.9	Chr19	53,932,295	54,010,277
nssv18320234	Submitted genomic		NC_000019.9:g.(?_5 3932295)_(54010277 _?)dup	GRCh37 (hg19)		NC_000019.9	Chr19	53,932,295	54,010,277
nssv18320352	Submitted genomic		NC_000019.9:g.(?_5 3932295)_(54010277 _?)dup	GRCh37 (hg19)		NC_000019.9	Chr19	53,932,295	54,010,277
nssv18321115	Submitted genomic		NC_000019.9:g.(?_5 3932295)_(54010277 _?)del	GRCh37 (hg19)		NC_000019.9	Chr19	53,932,295	54,010,277
nssv18321291	Submitted genomic		NC_000019.9:g.(?_5 3932295)_(54010277 _?)dup	GRCh37 (hg19)		NC_000019.9	Chr19	53,932,295	54,010,277
nssv18324243	Submitted genomic		NC_000019.9:g.(?_5 3932295)_(54010277 _?)dup	GRCh37 (hg19)		NC_000019.9	Chr19	53,932,295	54,010,277

dbVar

Database of genomic structural variation

nsv6625424

Links to Other Resources

Genome View

Variant Region Placement Information

Variant Call Information

Variant Call Placement Information

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant