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dbVar

Database of genomic structural variation

nsv6625441

Organism: Homo sapiens

Study:nstd224 (Zarrei et al. 2023)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:GRCh37

Variant Calls:2
Validation:Not tested
Clinical Assertions: No
Region Size:71,446

Publication(s):Zarrei et al. 2023

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 754 SVs from 71 studies. See in: genome view

Remapped(Score: Perfect):786,461-857,906

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv6625441	Remapped	Perfect	GRCh38.p12	ALT_REF_LOCI_9	First Pass	NT_187693.1	Chr19\|NT_1 87693.1	786,461	857,906
nsv6625441	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000019.9	Chr19	55,315,347	55,386,792

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv18283160	deletion	OSC2274	SNP array	Probe signal intensity	5
nssv18318410	deletion	OSC0890	SNP array	Probe signal intensity	6

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv18283160	Remapped	Perfect	NT_187693.1:g.(?_7 86461)_(857906_?)d el	GRCh38.p12	First Pass	NT_187693.1	Chr19\|NT_1 87693.1	786,461	857,906
nssv18318410	Remapped	Perfect	NT_187693.1:g.(?_7 86461)_(857906_?)d el	GRCh38.p12	First Pass	NT_187693.1	Chr19\|NT_1 87693.1	786,461	857,906
nssv18283160	Submitted genomic		NC_000019.9:g.(?_5 5315347)_(55386792 _?)del	GRCh37 (hg19)		NC_000019.9	Chr19	55,315,347	55,386,792
nssv18318410	Submitted genomic		NC_000019.9:g.(?_5 5315347)_(55386792 _?)del	GRCh37 (hg19)		NC_000019.9	Chr19	55,315,347	55,386,792

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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