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dbVar

Database of genomic structural variation

nsv6625624

Organism: Homo sapiens

Study:nstd224 (Zarrei et al. 2023)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:GRCh37

Variant Calls:7
Validation:Not tested
Clinical Assertions: No
Region Size:45,021

Publication(s):Zarrei et al. 2023

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 1100 SVs from 78 studies. See in: genome view

Remapped(Score: Perfect):1,450,709-1,495,729

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv6625624	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000001.11	Chr1	1,450,709	1,495,729
nsv6625624	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000001.10	Chr1	1,386,089	1,431,109

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv18283153	deletion	OSC2466	SNP array	Probe signal intensity	nssv18285014, nssv18283152
nssv18289678	deletion	OSC3398	SNP array	Probe signal intensity	5
nssv18291782	deletion	OSC3977	SNP array	Probe signal intensity	5
nssv18295702	deletion	OSC4641	SNP array	Probe signal intensity	8
nssv18296827	deletion	OSC4791	SNP array	Probe signal intensity	14
nssv18300592	duplication	OSC5546	SNP array	Probe signal intensity	5
nssv18324769	deletion	OSC1798	SNP array	Probe signal intensity	8

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv18283153	Remapped	Perfect	NC_000001.11:g.(?_ 1450709)_(1495729_ ?)del	GRCh38.p12	First Pass	NC_000001.11	Chr1	1,450,709	1,495,729
nssv18289678	Remapped	Perfect	NC_000001.11:g.(?_ 1450709)_(1495729_ ?)del	GRCh38.p12	First Pass	NC_000001.11	Chr1	1,450,709	1,495,729
nssv18291782	Remapped	Perfect	NC_000001.11:g.(?_ 1450709)_(1495729_ ?)del	GRCh38.p12	First Pass	NC_000001.11	Chr1	1,450,709	1,495,729
nssv18295702	Remapped	Perfect	NC_000001.11:g.(?_ 1450709)_(1495729_ ?)del	GRCh38.p12	First Pass	NC_000001.11	Chr1	1,450,709	1,495,729
nssv18296827	Remapped	Perfect	NC_000001.11:g.(?_ 1450709)_(1495729_ ?)del	GRCh38.p12	First Pass	NC_000001.11	Chr1	1,450,709	1,495,729
nssv18300592	Remapped	Perfect	NC_000001.11:g.(?_ 1450709)_(1495729_ ?)dup	GRCh38.p12	First Pass	NC_000001.11	Chr1	1,450,709	1,495,729
nssv18324769	Remapped	Perfect	NC_000001.11:g.(?_ 1450709)_(1495729_ ?)del	GRCh38.p12	First Pass	NC_000001.11	Chr1	1,450,709	1,495,729
nssv18283153	Submitted genomic		NC_000001.10:g.(?_ 1386089)_(1431109_ ?)del	GRCh37 (hg19)		NC_000001.10	Chr1	1,386,089	1,431,109
nssv18289678	Submitted genomic		NC_000001.10:g.(?_ 1386089)_(1431109_ ?)del	GRCh37 (hg19)		NC_000001.10	Chr1	1,386,089	1,431,109
nssv18291782	Submitted genomic		NC_000001.10:g.(?_ 1386089)_(1431109_ ?)del	GRCh37 (hg19)		NC_000001.10	Chr1	1,386,089	1,431,109
nssv18295702	Submitted genomic		NC_000001.10:g.(?_ 1386089)_(1431109_ ?)del	GRCh37 (hg19)		NC_000001.10	Chr1	1,386,089	1,431,109
nssv18296827	Submitted genomic		NC_000001.10:g.(?_ 1386089)_(1431109_ ?)del	GRCh37 (hg19)		NC_000001.10	Chr1	1,386,089	1,431,109
nssv18300592	Submitted genomic		NC_000001.10:g.(?_ 1386089)_(1431109_ ?)dup	GRCh37 (hg19)		NC_000001.10	Chr1	1,386,089	1,431,109
nssv18324769	Submitted genomic		NC_000001.10:g.(?_ 1386089)_(1431109_ ?)del	GRCh37 (hg19)		NC_000001.10	Chr1	1,386,089	1,431,109

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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