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dbVar

Database of genomic structural variation

nsv6626036

Organism: Homo sapiens

Study:nstd224 (Zarrei et al. 2023)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:GRCh37

Variant Calls:8
Validation:Not tested
Clinical Assertions: No
Region Size:17,157

Publication(s):Zarrei et al. 2023

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 215 SVs from 42 studies. See in: genome view

Remapped(Score: Perfect):59,541,113-59,558,269

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv6626036	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000001.11	Chr1	59,541,113	59,558,269
nsv6626036	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000001.10	Chr1	60,006,785	60,023,941

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv18281716	deletion	OSC0218	SNP array	Probe signal intensity	5
nssv18282593	deletion	OSC2061	SNP array	Probe signal intensity	6
nssv18289274	deletion	OSC3517	SNP array	Probe signal intensity	nssv18289849, nssv18290157
nssv18292956	deletion	OSC4155	SNP array	Probe signal intensity	5
nssv18295483	deletion	OSC4475	SNP array	Probe signal intensity	nssv18295242, nssv18295792, nssv18295793
nssv18307465	deletion	OSC0697	SNP array	Probe signal intensity	7
nssv18320889	deletion	OSC0995	SNP array	Probe signal intensity	nssv18319979, nssv18319980, nssv18320890
nssv18324474	deletion	OSC1575	SNP array	Probe signal intensity	10

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv18281716	Remapped	Perfect	NC_000001.11:g.(?_ 59541113)_(5955826 9_?)del	GRCh38.p12	First Pass	NC_000001.11	Chr1	59,541,113	59,558,269
nssv18282593	Remapped	Perfect	NC_000001.11:g.(?_ 59541113)_(5955826 9_?)del	GRCh38.p12	First Pass	NC_000001.11	Chr1	59,541,113	59,558,269
nssv18289274	Remapped	Perfect	NC_000001.11:g.(?_ 59541113)_(5955826 9_?)del	GRCh38.p12	First Pass	NC_000001.11	Chr1	59,541,113	59,558,269
nssv18292956	Remapped	Perfect	NC_000001.11:g.(?_ 59541113)_(5955826 9_?)del	GRCh38.p12	First Pass	NC_000001.11	Chr1	59,541,113	59,558,269
nssv18295483	Remapped	Perfect	NC_000001.11:g.(?_ 59541113)_(5955826 9_?)del	GRCh38.p12	First Pass	NC_000001.11	Chr1	59,541,113	59,558,269
nssv18307465	Remapped	Perfect	NC_000001.11:g.(?_ 59541113)_(5955826 9_?)del	GRCh38.p12	First Pass	NC_000001.11	Chr1	59,541,113	59,558,269
nssv18320889	Remapped	Perfect	NC_000001.11:g.(?_ 59541113)_(5955826 9_?)del	GRCh38.p12	First Pass	NC_000001.11	Chr1	59,541,113	59,558,269
nssv18324474	Remapped	Perfect	NC_000001.11:g.(?_ 59541113)_(5955826 9_?)del	GRCh38.p12	First Pass	NC_000001.11	Chr1	59,541,113	59,558,269
nssv18281716	Submitted genomic		NC_000001.10:g.(?_ 60006785)_(6002394 1_?)del	GRCh37 (hg19)		NC_000001.10	Chr1	60,006,785	60,023,941
nssv18282593	Submitted genomic		NC_000001.10:g.(?_ 60006785)_(6002394 1_?)del	GRCh37 (hg19)		NC_000001.10	Chr1	60,006,785	60,023,941
nssv18289274	Submitted genomic		NC_000001.10:g.(?_ 60006785)_(6002394 1_?)del	GRCh37 (hg19)		NC_000001.10	Chr1	60,006,785	60,023,941
nssv18292956	Submitted genomic		NC_000001.10:g.(?_ 60006785)_(6002394 1_?)del	GRCh37 (hg19)		NC_000001.10	Chr1	60,006,785	60,023,941
nssv18295483	Submitted genomic		NC_000001.10:g.(?_ 60006785)_(6002394 1_?)del	GRCh37 (hg19)		NC_000001.10	Chr1	60,006,785	60,023,941
nssv18307465	Submitted genomic		NC_000001.10:g.(?_ 60006785)_(6002394 1_?)del	GRCh37 (hg19)		NC_000001.10	Chr1	60,006,785	60,023,941
nssv18320889	Submitted genomic		NC_000001.10:g.(?_ 60006785)_(6002394 1_?)del	GRCh37 (hg19)		NC_000001.10	Chr1	60,006,785	60,023,941
nssv18324474	Submitted genomic		NC_000001.10:g.(?_ 60006785)_(6002394 1_?)del	GRCh37 (hg19)		NC_000001.10	Chr1	60,006,785	60,023,941

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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