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dbVar

Database of genomic structural variation

nsv6627960

Organism: Homo sapiens

Study:nstd224 (Zarrei et al. 2023)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:GRCh37

Variant Calls:4
Validation:Not tested
Clinical Assertions: No
Region Size:171,095

Publication(s):Zarrei et al. 2023

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 533 SVs from 53 studies. See in: genome view

Remapped(Score: Perfect):52,179,922-52,351,016

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv6627960	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000002.12	Chr2	52,179,922	52,351,016
nsv6627960	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000002.11	Chr2	52,407,060	52,578,154

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv18290503	deletion	OSC3737	SNP array	Probe signal intensity	11
nssv18291533	deletion	OSC3807	SNP array	Probe signal intensity	7
nssv18291729	deletion	OSC3946	SNP array	Probe signal intensity	7
nssv18311142	deletion	OSC0771	SNP array	Probe signal intensity	5

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv18290503	Remapped	Perfect	NC_000002.12:g.(?_ 52179922)_(5235101 6_?)del	GRCh38.p12	First Pass	NC_000002.12	Chr2	52,179,922	52,351,016
nssv18291533	Remapped	Perfect	NC_000002.12:g.(?_ 52179922)_(5235101 6_?)del	GRCh38.p12	First Pass	NC_000002.12	Chr2	52,179,922	52,351,016
nssv18291729	Remapped	Perfect	NC_000002.12:g.(?_ 52179922)_(5235101 6_?)del	GRCh38.p12	First Pass	NC_000002.12	Chr2	52,179,922	52,351,016
nssv18311142	Remapped	Perfect	NC_000002.12:g.(?_ 52179922)_(5235101 6_?)del	GRCh38.p12	First Pass	NC_000002.12	Chr2	52,179,922	52,351,016
nssv18290503	Submitted genomic		NC_000002.11:g.(?_ 52407060)_(5257815 4_?)del	GRCh37 (hg19)		NC_000002.11	Chr2	52,407,060	52,578,154
nssv18291533	Submitted genomic		NC_000002.11:g.(?_ 52407060)_(5257815 4_?)del	GRCh37 (hg19)		NC_000002.11	Chr2	52,407,060	52,578,154
nssv18291729	Submitted genomic		NC_000002.11:g.(?_ 52407060)_(5257815 4_?)del	GRCh37 (hg19)		NC_000002.11	Chr2	52,407,060	52,578,154
nssv18311142	Submitted genomic		NC_000002.11:g.(?_ 52407060)_(5257815 4_?)del	GRCh37 (hg19)		NC_000002.11	Chr2	52,407,060	52,578,154

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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