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dbVar

Database of genomic structural variation

nsv6628817

Organism: Homo sapiens

Study:nstd224 (Zarrei et al. 2023)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:GRCh37

Variant Calls:6
Validation:Not tested
Clinical Assertions: No
Region Size:84,789

Publication(s):Zarrei et al. 2023

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 1023 SVs from 84 studies. See in: genome view

Remapped(Score: Perfect):75,420,342-75,505,130

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv6628817	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000003.12	Chr3	75,420,342	75,505,130
nsv6628817	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000003.11	Chr3	75,469,493	75,554,281

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv18289265	deletion	OSC3509	SNP array	Probe signal intensity	11
nssv18292125	deletion	OSC3812	SNP array	Probe signal intensity	nssv18291541
nssv18294852	deletion	OSC0459	SNP array	Probe signal intensity	6
nssv18297895	deletion	OSC0518	SNP array	Probe signal intensity	7
nssv18323506	deletion	OSC1545	SNP array	Probe signal intensity	nssv18323505, nssv18322568
nssv18324410	deletion	OSC1732	SNP array	Probe signal intensity	nssv18325052, nssv18324695

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv18289265	Remapped	Perfect	NC_000003.12:g.(?_ 75420342)_(7550513 0_?)del	GRCh38.p12	First Pass	NC_000003.12	Chr3	75,420,342	75,505,130
nssv18292125	Remapped	Perfect	NC_000003.12:g.(?_ 75420342)_(7550513 0_?)del	GRCh38.p12	First Pass	NC_000003.12	Chr3	75,420,342	75,505,130
nssv18294852	Remapped	Perfect	NC_000003.12:g.(?_ 75420342)_(7550513 0_?)del	GRCh38.p12	First Pass	NC_000003.12	Chr3	75,420,342	75,505,130
nssv18297895	Remapped	Perfect	NC_000003.12:g.(?_ 75420342)_(7550513 0_?)del	GRCh38.p12	First Pass	NC_000003.12	Chr3	75,420,342	75,505,130
nssv18323506	Remapped	Perfect	NC_000003.12:g.(?_ 75420342)_(7550513 0_?)del	GRCh38.p12	First Pass	NC_000003.12	Chr3	75,420,342	75,505,130
nssv18324410	Remapped	Perfect	NC_000003.12:g.(?_ 75420342)_(7550513 0_?)del	GRCh38.p12	First Pass	NC_000003.12	Chr3	75,420,342	75,505,130
nssv18289265	Submitted genomic		NC_000003.11:g.(?_ 75469493)_(7555428 1_?)del	GRCh37 (hg19)		NC_000003.11	Chr3	75,469,493	75,554,281
nssv18292125	Submitted genomic		NC_000003.11:g.(?_ 75469493)_(7555428 1_?)del	GRCh37 (hg19)		NC_000003.11	Chr3	75,469,493	75,554,281
nssv18294852	Submitted genomic		NC_000003.11:g.(?_ 75469493)_(7555428 1_?)del	GRCh37 (hg19)		NC_000003.11	Chr3	75,469,493	75,554,281
nssv18297895	Submitted genomic		NC_000003.11:g.(?_ 75469493)_(7555428 1_?)del	GRCh37 (hg19)		NC_000003.11	Chr3	75,469,493	75,554,281
nssv18323506	Submitted genomic		NC_000003.11:g.(?_ 75469493)_(7555428 1_?)del	GRCh37 (hg19)		NC_000003.11	Chr3	75,469,493	75,554,281
nssv18324410	Submitted genomic		NC_000003.11:g.(?_ 75469493)_(7555428 1_?)del	GRCh37 (hg19)		NC_000003.11	Chr3	75,469,493	75,554,281

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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