nsv6629147
- Organism: Homo sapiens
- Study:nstd224 (Zarrei et al. 2023)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:GRCh37
- Variant Calls:10
- Validation:Not tested
- Clinical Assertions: No
- Region Size:179,155
- Publication(s):Zarrei et al. 2023
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 927 SVs from 89 studies. See in: genome view
Overlapping variant regions from other studies: 927 SVs from 89 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv6629147 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000004.12 | Chr4 | 167,887,449 | 168,066,603 |
| nsv6629147 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000004.11 | Chr4 | 168,808,600 | 168,987,754 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv18281839 | deletion | OSC2192 | SNP array | Probe signal intensity | 8 |
| nssv18285537 | deletion | OSC2837 | SNP array | Probe signal intensity | 8 |
| nssv18290867 | deletion | OSC3581 | SNP array | Probe signal intensity | 5 |
| nssv18291514 | deletion | OSC3796 | SNP array | Probe signal intensity | 6 |
| nssv18291569 | deletion | OSC3829 | SNP array | Probe signal intensity | 12 |
| nssv18292227 | deletion | OSC3890 | SNP array | Probe signal intensity | 10 |
| nssv18293171 | deletion | OSC4147 | SNP array | Probe signal intensity | 6 |
| nssv18308028 | deletion | OSC0721 | SNP array | Probe signal intensity | 6 |
| nssv18320665 | deletion | OSC1052 | SNP array | Probe signal intensity | 5 |
| nssv18323824 | deletion | OSC1507 | SNP array | Probe signal intensity | 10 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv18281839 | Remapped | Perfect | NC_000004.12:g.(?_ 167887449)_(168066 603_?)del | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 167,887,449 | 168,066,603 |
| nssv18285537 | Remapped | Perfect | NC_000004.12:g.(?_ 167887449)_(168066 603_?)del | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 167,887,449 | 168,066,603 |
| nssv18290867 | Remapped | Perfect | NC_000004.12:g.(?_ 167887449)_(168066 603_?)del | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 167,887,449 | 168,066,603 |
| nssv18291514 | Remapped | Perfect | NC_000004.12:g.(?_ 167887449)_(168066 603_?)del | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 167,887,449 | 168,066,603 |
| nssv18291569 | Remapped | Perfect | NC_000004.12:g.(?_ 167887449)_(168066 603_?)del | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 167,887,449 | 168,066,603 |
| nssv18292227 | Remapped | Perfect | NC_000004.12:g.(?_ 167887449)_(168066 603_?)del | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 167,887,449 | 168,066,603 |
| nssv18293171 | Remapped | Perfect | NC_000004.12:g.(?_ 167887449)_(168066 603_?)del | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 167,887,449 | 168,066,603 |
| nssv18308028 | Remapped | Perfect | NC_000004.12:g.(?_ 167887449)_(168066 603_?)del | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 167,887,449 | 168,066,603 |
| nssv18320665 | Remapped | Perfect | NC_000004.12:g.(?_ 167887449)_(168066 603_?)del | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 167,887,449 | 168,066,603 |
| nssv18323824 | Remapped | Perfect | NC_000004.12:g.(?_ 167887449)_(168066 603_?)del | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 167,887,449 | 168,066,603 |
| nssv18281839 | Submitted genomic | NC_000004.11:g.(?_ 168808600)_(168987 754_?)del | GRCh37 (hg19) | NC_000004.11 | Chr4 | 168,808,600 | 168,987,754 | ||
| nssv18285537 | Submitted genomic | NC_000004.11:g.(?_ 168808600)_(168987 754_?)del | GRCh37 (hg19) | NC_000004.11 | Chr4 | 168,808,600 | 168,987,754 | ||
| nssv18290867 | Submitted genomic | NC_000004.11:g.(?_ 168808600)_(168987 754_?)del | GRCh37 (hg19) | NC_000004.11 | Chr4 | 168,808,600 | 168,987,754 | ||
| nssv18291514 | Submitted genomic | NC_000004.11:g.(?_ 168808600)_(168987 754_?)del | GRCh37 (hg19) | NC_000004.11 | Chr4 | 168,808,600 | 168,987,754 | ||
| nssv18291569 | Submitted genomic | NC_000004.11:g.(?_ 168808600)_(168987 754_?)del | GRCh37 (hg19) | NC_000004.11 | Chr4 | 168,808,600 | 168,987,754 | ||
| nssv18292227 | Submitted genomic | NC_000004.11:g.(?_ 168808600)_(168987 754_?)del | GRCh37 (hg19) | NC_000004.11 | Chr4 | 168,808,600 | 168,987,754 | ||
| nssv18293171 | Submitted genomic | NC_000004.11:g.(?_ 168808600)_(168987 754_?)del | GRCh37 (hg19) | NC_000004.11 | Chr4 | 168,808,600 | 168,987,754 | ||
| nssv18308028 | Submitted genomic | NC_000004.11:g.(?_ 168808600)_(168987 754_?)del | GRCh37 (hg19) | NC_000004.11 | Chr4 | 168,808,600 | 168,987,754 | ||
| nssv18320665 | Submitted genomic | NC_000004.11:g.(?_ 168808600)_(168987 754_?)del | GRCh37 (hg19) | NC_000004.11 | Chr4 | 168,808,600 | 168,987,754 | ||
| nssv18323824 | Submitted genomic | NC_000004.11:g.(?_ 168808600)_(168987 754_?)del | GRCh37 (hg19) | NC_000004.11 | Chr4 | 168,808,600 | 168,987,754 |