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dbVar

Database of genomic structural variation

nsv6629402

Organism: Homo sapiens

Study:nstd224 (Zarrei et al. 2023)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:GRCh37

Variant Calls:3
Validation:Not tested
Clinical Assertions: No
Region Size:1,506,271

Publication(s):Zarrei et al. 2023

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 8410 SVs from 116 studies. See in: genome view

Remapped(Score: Perfect):187,530,553-189,036,823

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv6629402	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000004.12	Chr4	187,530,553	189,036,823
nsv6629402	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000004.11	Chr4	188,451,707	189,957,977

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv18289181	duplication	OSC3445	SNP array	Probe signal intensity	5
nssv18291106	duplication	OSC0386	SNP array	Probe signal intensity	nssv18290512, nssv18290756
nssv18320925	duplication	OSC1025	SNP array	Probe signal intensity	nssv18320390, nssv18320926

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv18289181	Remapped	Perfect	NC_000004.12:g.(?_ 187530553)_(189036 823_?)dup	GRCh38.p12	First Pass	NC_000004.12	Chr4	187,530,553	189,036,823
nssv18291106	Remapped	Perfect	NC_000004.12:g.(?_ 187530553)_(189036 823_?)dup	GRCh38.p12	First Pass	NC_000004.12	Chr4	187,530,553	189,036,823
nssv18320925	Remapped	Perfect	NC_000004.12:g.(?_ 187530553)_(189036 823_?)dup	GRCh38.p12	First Pass	NC_000004.12	Chr4	187,530,553	189,036,823
nssv18289181	Submitted genomic		NC_000004.11:g.(?_ 188451707)_(189957 977_?)dup	GRCh37 (hg19)		NC_000004.11	Chr4	188,451,707	189,957,977
nssv18291106	Submitted genomic		NC_000004.11:g.(?_ 188451707)_(189957 977_?)dup	GRCh37 (hg19)		NC_000004.11	Chr4	188,451,707	189,957,977
nssv18320925	Submitted genomic		NC_000004.11:g.(?_ 188451707)_(189957 977_?)dup	GRCh37 (hg19)		NC_000004.11	Chr4	188,451,707	189,957,977

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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