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dbVar

Database of genomic structural variation

nsv6630838

Organism: Homo sapiens

Study:nstd224 (Zarrei et al. 2023)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:GRCh37

Variant Calls:9
Validation:Not tested
Clinical Assertions: No
Region Size:20,814

Publication(s):Zarrei et al. 2023

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 218 SVs from 48 studies. See in: genome view

Remapped(Score: Perfect):120,664,337-120,685,150

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv6630838	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000006.12	Chr6	120,664,337	120,685,150
nsv6630838	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000006.11	Chr6	120,985,483	121,006,296

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv18297245	deletion	OSC4854	SNP array	Probe signal intensity	nssv18296681, nssv18297244
nssv18297249	deletion	OSC4856	SNP array	Probe signal intensity	8
nssv18297578	deletion	OSC4861	SNP array	Probe signal intensity	7
nssv18298526	deletion	OSC5124	SNP array	Probe signal intensity	nssv18298854, nssv18298200
nssv18298925	deletion	OSC5150	SNP array	Probe signal intensity	6
nssv18299037	deletion	OSC5233	SNP array	Probe signal intensity	nssv18299625
nssv18299562	deletion	OSC5192	SNP array	Probe signal intensity	6
nssv18300229	deletion	OSC5450	SNP array	Probe signal intensity	nssv18300821, nssv18301112, nssv18301113
nssv18301480	deletion	OSC5698	SNP array	Probe signal intensity	6

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv18297245	Remapped	Perfect	NC_000006.12:g.(?_ 120664337)_(120685 150_?)del	GRCh38.p12	First Pass	NC_000006.12	Chr6	120,664,337	120,685,150
nssv18297249	Remapped	Perfect	NC_000006.12:g.(?_ 120664337)_(120685 150_?)del	GRCh38.p12	First Pass	NC_000006.12	Chr6	120,664,337	120,685,150
nssv18297578	Remapped	Perfect	NC_000006.12:g.(?_ 120664337)_(120685 150_?)del	GRCh38.p12	First Pass	NC_000006.12	Chr6	120,664,337	120,685,150
nssv18298526	Remapped	Perfect	NC_000006.12:g.(?_ 120664337)_(120685 150_?)del	GRCh38.p12	First Pass	NC_000006.12	Chr6	120,664,337	120,685,150
nssv18298925	Remapped	Perfect	NC_000006.12:g.(?_ 120664337)_(120685 150_?)del	GRCh38.p12	First Pass	NC_000006.12	Chr6	120,664,337	120,685,150
nssv18299037	Remapped	Perfect	NC_000006.12:g.(?_ 120664337)_(120685 150_?)del	GRCh38.p12	First Pass	NC_000006.12	Chr6	120,664,337	120,685,150
nssv18299562	Remapped	Perfect	NC_000006.12:g.(?_ 120664337)_(120685 150_?)del	GRCh38.p12	First Pass	NC_000006.12	Chr6	120,664,337	120,685,150
nssv18300229	Remapped	Perfect	NC_000006.12:g.(?_ 120664337)_(120685 150_?)del	GRCh38.p12	First Pass	NC_000006.12	Chr6	120,664,337	120,685,150
nssv18301480	Remapped	Perfect	NC_000006.12:g.(?_ 120664337)_(120685 150_?)del	GRCh38.p12	First Pass	NC_000006.12	Chr6	120,664,337	120,685,150
nssv18297245	Submitted genomic		NC_000006.11:g.(?_ 120985483)_(121006 296_?)del	GRCh37 (hg19)		NC_000006.11	Chr6	120,985,483	121,006,296
nssv18297249	Submitted genomic		NC_000006.11:g.(?_ 120985483)_(121006 296_?)del	GRCh37 (hg19)		NC_000006.11	Chr6	120,985,483	121,006,296
nssv18297578	Submitted genomic		NC_000006.11:g.(?_ 120985483)_(121006 296_?)del	GRCh37 (hg19)		NC_000006.11	Chr6	120,985,483	121,006,296
nssv18298526	Submitted genomic		NC_000006.11:g.(?_ 120985483)_(121006 296_?)del	GRCh37 (hg19)		NC_000006.11	Chr6	120,985,483	121,006,296
nssv18298925	Submitted genomic		NC_000006.11:g.(?_ 120985483)_(121006 296_?)del	GRCh37 (hg19)		NC_000006.11	Chr6	120,985,483	121,006,296
nssv18299037	Submitted genomic		NC_000006.11:g.(?_ 120985483)_(121006 296_?)del	GRCh37 (hg19)		NC_000006.11	Chr6	120,985,483	121,006,296
nssv18299562	Submitted genomic		NC_000006.11:g.(?_ 120985483)_(121006 296_?)del	GRCh37 (hg19)		NC_000006.11	Chr6	120,985,483	121,006,296
nssv18300229	Submitted genomic		NC_000006.11:g.(?_ 120985483)_(121006 296_?)del	GRCh37 (hg19)		NC_000006.11	Chr6	120,985,483	121,006,296
nssv18301480	Submitted genomic		NC_000006.11:g.(?_ 120985483)_(121006 296_?)del	GRCh37 (hg19)		NC_000006.11	Chr6	120,985,483	121,006,296

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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