nsv6634478
- Organism: Homo sapiens
- Study:nstd102 (Clinical Structural Variants)
- Variant Type:copy number variation
- Method Type:Multiple
- Submitted on:GRCh37, GRCh38
- Variant Calls:2
- Validation:Not tested
- Clinical Assertions: Yes
- Region Size:94
- Description:
See descriptions for individual calls in download files - Publication(s):Lindeman et al. 2018
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 283 SVs from 63 studies. See in: genome view
Overlapping variant regions from other studies: 283 SVs from 63 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Assembly | Assembly Unit | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|
| nsv6634478 | Submitted genomic | GRCh38 (hg38) | Primary Assembly | NC_000003.12 | Chr3 | 195,783,023 | 195,783,116 |
| nsv6634478 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000003.11 | Chr3 | 195,509,894 | 195,509,987 |
Variant Call Information
| Variant Call ID | Type | Method | Analysis | Subject Phenotype | Clinical Interpretation | Source of Interpretation | ClinVar ID |
|---|---|---|---|---|---|---|---|
| nssv18326596 | deletion | Multiple | Multiple | HEPATOCELLULAR CARCINOMA; Hepatocellular carcinoma; Hepatocellular carcinoma | Pathogenic | ClinVar | RCV002302789.2, VCV001713064.3 |
| nssv18330671 | deletion | Multiple | Multiple | LUNG CANCER; Lung cancer | Pathogenic | ClinVar | RCV002464626.1, VCV001713064.3 |
Variant Call Placement Information
| Variant Call ID | Placement Type | HGVS | Assembly | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|
| nssv18326596 | Submitted genomic | NC_000003.12:g.195 783023_195783116de l | GRCh38 (hg38) | NC_000003.12 | Chr3 | 195,783,023 | 195,783,116 |
| nssv18330671 | Submitted genomic | NC_000003.12:g.195 783023_195783116de l | GRCh38 (hg38) | NC_000003.12 | Chr3 | 195,783,023 | 195,783,116 |
| nssv18326596 | Submitted genomic | NC_000003.11:g.195 509894_195509987de l | GRCh37 (hg19) | NC_000003.11 | Chr3 | 195,509,894 | 195,509,987 |
| nssv18330671 | Submitted genomic | NC_000003.11:g.195 509894_195509987de l | GRCh37 (hg19) | NC_000003.11 | Chr3 | 195,509,894 | 195,509,987 |
No validation data were submitted for this variant
Clinical Assertions
| Variant Call ID | HGVS | Type | Allele Origin | Subject Phenotype | Clinical Interpretation | Source of Interpretation | ClinVar ID |
|---|---|---|---|---|---|---|---|
| nssv18326596 | GRCh37: NC_000003.11:g.195509894_195509987del, GRCh38: NC_000003.12:g.195783023_195783116del | deletion | somatic | HEPATOCELLULAR CARCINOMA; Hepatocellular carcinoma; Hepatocellular carcinoma | Pathogenic | ClinVar | RCV002302789.2, VCV001713064.3 |
| nssv18330671 | GRCh37: NC_000003.11:g.195509894_195509987del, GRCh38: NC_000003.12:g.195783023_195783116del | deletion | somatic | LUNG CANCER; Lung cancer | Pathogenic | ClinVar | RCV002464626.1, VCV001713064.3 |