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dbVar

Database of genomic structural variation

nsv6670141

Organism: Homo sapiens

Study:nstd229 (Jun et al. 2023)
Variant Type:copy number variation
Method Type:Sequencing
Submitted on:GRCh38

Variant Calls:1
Validation:Not tested
Clinical Assertions: No
Region Size:1,678

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 137 SVs from 33 studies. See in: genome view

Submitted genomic63,861,182-63,862,859

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Start	Stop
nsv6670141	Submitted genomic		GRCh38 (hg38)	Primary Assembly		NC_000002.12	Chr2	63,861,182	63,862,859
nsv6670141	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000002.11	Chr2	64,088,316	64,089,993

Variant Call Information

Variant Call ID	Type	Method	Analysis
nssv18468169	deletion	Sequencing	Split read and paired-end mapping

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Start	Stop
nssv18468169	Submitted genomic		NC_000002.12:g.638 61182_63862859del	GRCh38 (hg38)		NC_000002.12	Chr2	63,861,182	63,862,859
nssv18468169	Remapped	Perfect	NC_000002.11:g.640 88316_64089993del	GRCh37.p13	First Pass	NC_000002.11	Chr2	64,088,316	64,089,993

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

Complete genotype and/or allele frequency data for this study can be found on dbVar's FTP site.

Genotype Information

Variant Call ID	Allele Frequency (AF)	Allele Count (AC)	Allele Number (AN)
nssv18468169	0.002	663	271372

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