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dbVar

Database of genomic structural variation

nsv6789750

Organism: Homo sapiens

Study:nstd229 (Jun et al. 2023)
Variant Type:copy number variation
Method Type:Sequencing
Submitted on:GRCh38

Variant Calls:1
Validation:Not tested
Clinical Assertions: No
Region Size:36

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 81 SVs from 14 studies. See in: genome view

Submitted genomic35,890,819-35,890,854

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Start	Stop
nsv6789750	Submitted genomic		GRCh38 (hg38)	Primary Assembly		NC_000006.12	Chr6	35,890,819	35,890,854
nsv6789750	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000006.11	Chr6	35,858,596	35,858,631

Variant Call Information

Variant Call ID	Type	Method	Analysis
nssv18528007	deletion	Sequencing	Split read and paired-end mapping

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Start	Stop
nssv18528007	Submitted genomic		NC_000006.12:g.358 90819_35890854del	GRCh38 (hg38)		NC_000006.12	Chr6	35,890,819	35,890,854
nssv18528007	Remapped	Perfect	NC_000006.11:g.358 58596_35858631del	GRCh37.p13	First Pass	NC_000006.11	Chr6	35,858,596	35,858,631

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

Complete genotype and/or allele frequency data for this study can be found on dbVar's FTP site.

Genotype Information

Variant Call ID	Allele Frequency (AF)	Allele Count (AC)	Allele Number (AN)
nssv18528007	0.013	3147	249186

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