nsv6884782
- Organism: Homo sapiens
- Study:nstd229 (Jun et al. 2023)
- Variant Type:copy number variation
- Method Type:Sequencing
- Submitted on:GRCh38
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:51
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 154 SVs from 26 studies. See in: genome view
Overlapping variant regions from other studies: 154 SVs from 26 studies. See in: genome view
Overlapping variant regions from other studies: 18 SVs from 9 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv6884782 | Submitted genomic | GRCh38 (hg38) | Primary Assembly | NC_000009.12 | Chr9 | 133,391,126 | 133,391,176 | ||
| nsv6884782 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | Second Pass | NC_000009.11 | Chr9 | 136,256,902 | 136,256,952 |
| nsv6884782 | Remapped | Perfect | GRCh37.p13 | PATCHES | First Pass | NW_003315925.1 | Chr9|NW_00 3315925.1 | 217,220 | 217,270 |
Variant Call Information
| Variant Call ID | Type | Method | Analysis |
|---|---|---|---|
| nssv18565759 | deletion | Sequencing | Split read and paired-end mapping |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv18565759 | Submitted genomic | NC_000009.12:g.133 391126_133391176de l | GRCh38 (hg38) | NC_000009.12 | Chr9 | 133,391,126 | 133,391,176 | ||
| nssv18565759 | Remapped | Perfect | NW_003315925.1:g.2 17220_217270del | GRCh37.p13 | First Pass | NW_003315925.1 | Chr9|NW_00 3315925.1 | 217,220 | 217,270 |
| nssv18565759 | Remapped | Perfect | NC_000009.11:g.136 256902_136256952de l | GRCh37.p13 | Second Pass | NC_000009.11 | Chr9 | 136,256,902 | 136,256,952 |
No validation data were submitted for this variant
No clinical assertion data were submitted for this variant
Complete genotype and/or allele frequency data for this study can be found on dbVar's FTP site.
Genotype Information
| Variant Call ID | Allele Frequency (AF) | Allele Count (AC) | Allele Number (AN) |
|---|---|---|---|
| nssv18565759 | <0.001 | 130 | 257072 |