nsv70
- Organism: Homo sapiens
- Study:nstd1 (Tuzun et al. 2005)
- Variant Type:inversion
- Method Type:Sequencing
- Submitted on:NCBI35 (hg17)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:42,619
- Publication(s):Tuzun et al. 2005
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 683 SVs from 86 studies. See in: genome view
Overlapping variant regions from other studies: 385 SVs from 56 studies. See in: genome view
Overlapping variant regions from other studies: 681 SVs from 86 studies. See in: genome view
Overlapping variant regions from other studies: 18 SVs from 10 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|
| nsv70 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000011.10 | Chr11 | 49,720,155 | - | 49,762,773 |
| nsv70 | Remapped | Pass | GRCh38.p12 | PATCHES | Second Pass | NW_019805495.1 | Chr11|NW_0 19805495.1 | - | 192,346 | 226,922 |
| nsv70 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000011.9 | Chr11 | 49,741,707 | - | 49,784,325 |
| nsv70 | Submitted genomic | NCBI35 (hg17) | Primary Assembly | NC_000011.8 | Chr11 | 49,698,283 | - | 49,740,901 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv70 | inversion | SAMN00000376 | Sequencing | Paired-end mapping | 297 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|
| nssv70 | Remapped | Pass | NW_019805495.1:g.( ?_192346)_(?_22692 2)inv | GRCh38.p12 | Second Pass | NW_019805495.1 | Chr11|NW_0 19805495.1 | - | 192,346 | 226,922 |
| nssv70 | Remapped | Perfect | NC_000011.10:g.(49 720155_?)_(?_49762 773)inv | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 49,720,155 | - | 49,762,773 |
| nssv70 | Remapped | Perfect | NC_000011.9:g.(497 41707_?)_(?_497843 25)inv | GRCh37.p13 | First Pass | NC_000011.9 | Chr11 | 49,741,707 | - | 49,784,325 |
| nssv70 | Submitted genomic | NC_000011.8:g.(496 98283_?)_(?_497409 01)inv | NCBI35 (hg17) | NC_000011.8 | Chr11 | 49,698,283 | - | 49,740,901 |