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dbVar

Database of genomic structural variation

nsv7001878

Organism: Homo sapiens

Study:nstd229 (Jun et al. 2023)
Variant Type:copy number variation
Method Type:Sequencing
Submitted on:GRCh38

Variant Calls:1
Validation:Not tested
Clinical Assertions: No
Region Size:39,476

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 285 SVs from 35 studies. See in: genome view

Submitted genomic55,880,966-55,920,441

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Start	Stop
nsv7001878	Submitted genomic		GRCh38 (hg38)	Primary Assembly		NC_000019.10	Chr19	55,880,966	55,920,441
nsv7001878	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000019.9	Chr19	56,392,332	56,431,807

Variant Call Information

Variant Call ID	Type	Method	Analysis
nssv18638991	duplication	Sequencing	Split read and paired-end mapping

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Start	Stop
nssv18638991	Submitted genomic		NC_000019.10:g.558 80966_55920441dup	GRCh38 (hg38)		NC_000019.10	Chr19	55,880,966	55,920,441
nssv18638991	Remapped	Perfect	NC_000019.9:g.5639 2332_56431807dup	GRCh37.p13	First Pass	NC_000019.9	Chr19	56,392,332	56,431,807

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

Complete genotype and/or allele frequency data for this study can be found on dbVar's FTP site.

Genotype Information

Variant Call ID	Allele Frequency (AF)	Allele Count (AC)	Allele Number (AN)
nssv18638991	7e-06	2	275734

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