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dbVar

Database of genomic structural variation

nsv7005555

Organism: Homo sapiens

Study:nstd229 (Jun et al. 2023)
Variant Type:copy number variation
Method Type:Sequencing
Submitted on:GRCh38

Variant Calls:1
Validation:Not tested
Clinical Assertions: No
Region Size:58,598

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 224 SVs from 40 studies. See in: genome view

Submitted genomic45,992,059-46,050,656

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Start	Stop
nsv7005555	Submitted genomic		GRCh38 (hg38)	Primary Assembly		NC_000019.10	Chr19	45,992,059	46,050,656
nsv7005555	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000019.9	Chr19	46,495,317	46,553,914

Variant Call Information

Variant Call ID	Type	Method	Analysis
nssv18425267	deletion	Sequencing	Split read and paired-end mapping

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Start	Stop
nssv18425267	Submitted genomic		NC_000019.10:g.459 92059_46050656del	GRCh38 (hg38)		NC_000019.10	Chr19	45,992,059	46,050,656
nssv18425267	Remapped	Perfect	NC_000019.9:g.4649 5317_46553914del	GRCh37.p13	First Pass	NC_000019.9	Chr19	46,495,317	46,553,914

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

Complete genotype and/or allele frequency data for this study can be found on dbVar's FTP site.

Genotype Information

Variant Call ID	Allele Frequency (AF)	Allele Count (AC)	Allele Number (AN)
nssv18425267	1.1e-05	3	275444

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