Warning: The NCBI web site requires JavaScript to function. more...

dbVar

Database of genomic structural variation

nsv7007

Organism: Homo sapiens

Study:nstd2 (Kidd et al. 2008)
Variant Type:copy number variation
Method Type:Sequencing
Submitted on:NCBI35 (hg17)

Variant Calls:2
Validation:Not tested
Clinical Assertions: No
Region Size:70,999

Publication(s):Kidd et al. 2008

Links to Other Resources

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 547 SVs from 48 studies. See in: genome view

Remapped(Score: Perfect):100,226,294-100,297,292

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Outer Start	Outer Stop
nsv7007	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000023.11	ChrX	100,226,294	100,297,292
nsv7007	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000023.10	ChrX	99,481,292	99,552,290
nsv7007	Submitted genomic		NCBI35 (hg17)	Primary Assembly		NC_000023.8	ChrX	99,287,437	99,358,435

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv1850	deletion	NA18555	Sequencing	Paired-end mapping	1,472
nssv8754	deletion	NA12156	Sequencing	Paired-end mapping	3,265

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Outer Start	Outer Stop
nssv1850	Remapped	Perfect	NC_000023.11:g.(10 0226294_?)_(?_1002 70884)del	GRCh38.p12	First Pass	NC_000023.11	ChrX	100,226,294	100,270,884
nssv8754	Remapped	Perfect	NC_000023.11:g.(10 0252337_?)_(?_1002 97292)del	GRCh38.p12	First Pass	NC_000023.11	ChrX	100,252,337	100,297,292
nssv1850	Remapped	Perfect	NC_000023.10:g.(99 481292_?)_(?_99525 882)del	GRCh37.p13	First Pass	NC_000023.10	ChrX	99,481,292	99,525,882
nssv8754	Remapped	Perfect	NC_000023.10:g.(99 507335_?)_(?_99552 290)del	GRCh37.p13	First Pass	NC_000023.10	ChrX	99,507,335	99,552,290
nssv1850	Submitted genomic		NC_000023.8:g.(992 87437_?)_(?_993320 27)del4566	NCBI35 (hg17)		NC_000023.8	ChrX	99,287,437	99,332,027
nssv8754	Submitted genomic		NC_000023.8:g.(993 13480_?)_(?_993584 35)del6622	NCBI35 (hg17)		NC_000023.8	ChrX	99,313,480	99,358,435

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

You are here: NCBI