nsv7085366
- Organism: Homo sapiens
- Study:nstd229 (Jun et al. 2023)
- Variant Type:copy number variation
- Method Type:Sequencing
- Submitted on:GRCh38
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:500
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 293 SVs from 22 studies. See in: genome view
Overlapping variant regions from other studies: 282 SVs from 20 studies. See in: genome view
Overlapping variant regions from other studies: 27 SVs from 9 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv7085366 | Submitted genomic | GRCh38 (hg38) | Primary Assembly | NC_000023.11 | ChrX | 149,548,001 | 149,548,500 | ||
| nsv7085366 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | Second Pass | NC_000023.10 | ChrX | 148,629,546 | 148,630,045 |
| nsv7085366 | Remapped | Perfect | GRCh37.p13 | PATCHES | First Pass | NW_004070890.2 | ChrX|NW_00 4070890.2 | 5,072,399 | 5,072,898 |
Variant Call Information
| Variant Call ID | Type | Method | Analysis |
|---|---|---|---|
| nssv18458684 | deletion | Sequencing | Split read and paired-end mapping |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv18458684 | Submitted genomic | NC_000023.11:g.149 548001_149548500de l | GRCh38 (hg38) | NC_000023.11 | ChrX | 149,548,001 | 149,548,500 | ||
| nssv18458684 | Remapped | Perfect | NW_004070890.2:g.5 072399_5072898del | GRCh37.p13 | First Pass | NW_004070890.2 | ChrX|NW_00 4070890.2 | 5,072,399 | 5,072,898 |
| nssv18458684 | Remapped | Perfect | NC_000023.10:g.148 629546_148630045de l | GRCh37.p13 | Second Pass | NC_000023.10 | ChrX | 148,629,546 | 148,630,045 |
No validation data were submitted for this variant
No clinical assertion data were submitted for this variant
Complete genotype and/or allele frequency data for this study can be found on dbVar's FTP site.
Genotype Information
| Variant Call ID | Allele Frequency (AF) | Allele Count (AC) | Allele Number (AN) |
|---|---|---|---|
| nssv18458684 | 0.016 | 3575 | 216680 |