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dbVar

Database of genomic structural variation

nsv735

Organism: Homo sapiens

Study:nstd2 (Kidd et al. 2008)
Variant Type:copy number variation
Method Type:Sequencing
Submitted on:NCBI35 (hg17)

Variant Calls:2
Validation:Not tested
Clinical Assertions: No
Region Size:83,485

Publication(s):Kidd et al. 2008

Links to Other Resources

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 367 SVs from 60 studies. See in: genome view

Remapped(Score: Perfect):59,405,451-59,488,935

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Outer Start	Outer Stop
nsv735	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000012.12	Chr12	59,405,451	59,488,935
nsv735	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000012.11	Chr12	59,799,232	59,882,716
nsv735	Submitted genomic		NCBI35 (hg17)	Primary Assembly		NC_000012.9	Chr12	58,085,499	58,168,983

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv9034	deletion	NA12156	Sequencing	Paired-end mapping	3,265
nssv6511	deletion	NA12156	Sequencing	Paired-end mapping	3,265

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Outer Start	Outer Stop
nssv9034	Remapped	Perfect	NC_000012.12:g.(59 405451_?)_(?_59446 060)del	GRCh38.p12	First Pass	NC_000012.12	Chr12	59,405,451	59,446,060
nssv6511	Remapped	Perfect	NC_000012.12:g.(59 443306_?)_(?_59488 935)del	GRCh38.p12	First Pass	NC_000012.12	Chr12	59,443,306	59,488,935
nssv9034	Remapped	Perfect	NC_000012.11:g.(59 799232_?)_(?_59839 841)del	GRCh37.p13	First Pass	NC_000012.11	Chr12	59,799,232	59,839,841
nssv6511	Remapped	Perfect	NC_000012.11:g.(59 837087_?)_(?_59882 716)del	GRCh37.p13	First Pass	NC_000012.11	Chr12	59,837,087	59,882,716
nssv9034	Submitted genomic		NC_000012.9:g.(580 85499_?)_(?_581261 08)del5974	NCBI35 (hg17)		NC_000012.9	Chr12	58,085,499	58,126,108
nssv6511	Submitted genomic		NC_000012.9:g.(581 23354_?)_(?_581689 83)del6200	NCBI35 (hg17)		NC_000012.9	Chr12	58,123,354	58,168,983

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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