nsv7355
- Organism: Homo sapiens
- Study:nstd2 (Kidd et al. 2008)
- Variant Type:inversion
- Method Type:Sequencing
- Submitted on:NCBI35 (hg17)
- Variant Calls:2
- Validation:Yes
- Clinical Assertions: No
- Region Size:90,778
- Publication(s):Kidd et al. 2008
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 317 SVs from 60 studies. See in: genome view
Overlapping variant regions from other studies: 317 SVs from 60 studies. See in: genome view
Overlapping variant regions from other studies: 12 SVs from 3 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv7355 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000003.12 | Chr3 | 107,965,612 | 108,056,389 |
| nsv7355 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000003.11 | Chr3 | 107,684,459 | 107,775,236 |
| nsv7355 | Submitted genomic | NCBI35 (hg17) | Primary Assembly | NC_000003.9 | Chr3 | 109,167,149 | 109,257,926 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv11066 | inversion | SAMN00000376 | Sequencing | Paired-end mapping | 366 |
| nssv11067 | inversion | SAMN00000376 | Sequencing | Paired-end mapping | 366 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv11066 | Remapped | Perfect | NC_000003.12:g.(10 7965612_?)_(?_1080 21480)inv | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 107,965,612 | 108,021,480 |
| nssv11067 | Remapped | Perfect | NC_000003.12:g.(10 8007470_?)_(?_1080 56389)inv | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 108,007,470 | 108,056,389 |
| nssv11066 | Remapped | Perfect | NC_000003.11:g.(10 7684459_?)_(?_1077 40327)inv | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 107,684,459 | 107,740,327 |
| nssv11067 | Remapped | Perfect | NC_000003.11:g.(10 7726317_?)_(?_1077 75236)inv | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 107,726,317 | 107,775,236 |
| nssv11066 | Submitted genomic | NC_000003.9:g.(109 167149_?)_(?_10922 3017)inv | NCBI35 (hg17) | NC_000003.9 | Chr3 | 109,167,149 | 109,223,017 | ||
| nssv11067 | Submitted genomic | NC_000003.9:g.(109 209007_?)_(?_10925 7926)inv | NCBI35 (hg17) | NC_000003.9 | Chr3 | 109,209,007 | 109,257,926 |
Validation Information
| Variant Call ID | Experiment ID | Sample ID | Method | Analysis | Result |
|---|---|---|---|---|---|
| nssv11067 | 3 | SAMN00000376 | Multiple complete digestion | MCD analysis | Pass |