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dbVar

Database of genomic structural variation

nsv7374

Organism: Homo sapiens

Study:nstd2 (Kidd et al. 2008)
Variant Type:inversion
Method Type:Sequencing
Submitted on:NCBI35 (hg17)

Variant Calls:1
Validation:Not tested
Clinical Assertions: No
Region Size:94,668

Publication(s):Kidd et al. 2008

Links to Other Resources

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 946 SVs from 71 studies. See in: genome view

Remapped(Score: Perfect):179,407,844-179,502,511

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Outer Start	Outer Stop
nsv7374	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000005.10	Chr5	179,407,844	179,502,511
nsv7374	Remapped	Good	GRCh38.p12	PATCHES	Second Pass	NW_016107298.1	Chr5\|NW_01 6107298.1	172,551	267,150
nsv7374	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000005.9	Chr5	178,834,845	178,929,512
nsv7374	Submitted genomic		NCBI35 (hg17)	Primary Assembly		NC_000005.8	Chr5	178,767,451	178,862,118

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv2562	inversion	NA18555	Sequencing	Paired-end mapping	1,472

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Outer Start	Outer Stop
nssv2562	Remapped	Good	NW_016107298.1:g.( 172551_?)_(?_26715 0)inv	GRCh38.p12	Second Pass	NW_016107298.1	Chr5\|NW_01 6107298.1	172,551	267,150
nssv2562	Remapped	Perfect	NC_000005.10:g.(17 9407844_?)_(?_1795 02511)inv	GRCh38.p12	First Pass	NC_000005.10	Chr5	179,407,844	179,502,511
nssv2562	Remapped	Perfect	NC_000005.9:g.(178 834845_?)_(?_17892 9512)inv	GRCh37.p13	First Pass	NC_000005.9	Chr5	178,834,845	178,929,512
nssv2562	Submitted genomic		NC_000005.8:g.(178 767451_?)_(?_17886 2118)inv	NCBI35 (hg17)		NC_000005.8	Chr5	178,767,451	178,862,118

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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