nsv7455
- Organism: Homo sapiens
- Study:nstd2 (Kidd et al. 2008)
- Variant Type:inversion
- Method Type:Sequencing
- Submitted on:NCBI35 (hg17)
- Variant Calls:4
- Validation:Yes
- Clinical Assertions: No
- Region Size:88,043
- Publication(s):Kidd et al. 2008
- TRACE: TEMPLATE_ID='166377_ABC7_000000613622_O18'
- TRACE: TEMPLATE_ID='166671_ABC7_000043055800_P2'
- TRACE: TEMPLATE_ID='170215_ABC9_3_2_000041261500_C10'
- TRACE: TEMPLATE_ID='170215_ABC9_3_2_000043827400_J1'
- TRACE: TEMPLATE_ID='170215_ABC9_3_2_000043893000_I20'
- TRACE: TEMPLATE_ID='171417_ABC10_2_1_000045503100_F11'
- TRACE: TEMPLATE_ID='171417_ABC10_2_1_000045528300_A22'
- TRACE: TEMPLATE_ID='173650_ABC10_2_1_000044483800_F11'
- TRACE: TEMPLATE_ID='173650_ABC10_2_1_000044503400_C3'
- TRACE: TEMPLATE_ID='174222_ABC10_2_1_000044370000_N7'
- TRACE: TEMPLATE_ID='174552_ABC10_2_1_000044590900_E3'
- Overlapping Genes
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 588 SVs from 52 studies. See in: genome view
Overlapping variant regions from other studies: 588 SVs from 52 studies. See in: genome view
Overlapping variant regions from other studies: 43 SVs from 6 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv7455 | Remapped | Good | GRCh38.p12 | Primary Assembly | First Pass | NC_000023.11 | ChrX | 106,239,923 | 106,327,965 |
| nsv7455 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000023.10 | ChrX | 105,483,139 | 105,571,192 |
| nsv7455 | Submitted genomic | NCBI35 (hg17) | Primary Assembly | NC_000023.8 | ChrX | 105,289,284 | 105,377,337 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv899 | inversion | NA19240 | Sequencing | Paired-end mapping | 1,381 |
| nssv10724 | inversion | NA18956 | Sequencing | Paired-end mapping | 905 |
| nssv9487 | inversion | SAMN00001588 | Sequencing | Paired-end mapping | 237 |
| nssv900 | inversion | NA19240 | Sequencing | Paired-end mapping | 1,381 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv899 | Remapped | Perfect | NC_000023.11:g.(10 6239923_?)_(?_1062 87295)inv | GRCh38.p12 | First Pass | NC_000023.11 | ChrX | 106,239,923 | 106,287,295 |
| nssv10724 | Remapped | Perfect | NC_000023.11:g.(10 6241559_?)_(?_1062 86573)inv | GRCh38.p12 | First Pass | NC_000023.11 | ChrX | 106,241,559 | 106,286,573 |
| nssv9487 | Remapped | Good | NC_000023.11:g.(10 6277800_?)_(?_1063 26472)inv | GRCh38.p12 | First Pass | NC_000023.11 | ChrX | 106,277,800 | 106,326,472 |
| nssv900 | Remapped | Good | NC_000023.11:g.(10 6281516_?)_(?_1063 27965)inv | GRCh38.p12 | First Pass | NC_000023.11 | ChrX | 106,281,516 | 106,327,965 |
| nssv899 | Remapped | Perfect | NC_000023.10:g.(10 5483139_?)_(?_1055 30511)inv | GRCh37.p13 | First Pass | NC_000023.10 | ChrX | 105,483,139 | 105,530,511 |
| nssv10724 | Remapped | Perfect | NC_000023.10:g.(10 5484775_?)_(?_1055 29789)inv | GRCh37.p13 | First Pass | NC_000023.10 | ChrX | 105,484,775 | 105,529,789 |
| nssv9487 | Remapped | Perfect | NC_000023.10:g.(10 5521016_?)_(?_1055 69699)inv | GRCh37.p13 | First Pass | NC_000023.10 | ChrX | 105,521,016 | 105,569,699 |
| nssv900 | Remapped | Perfect | NC_000023.10:g.(10 5524732_?)_(?_1055 71192)inv | GRCh37.p13 | First Pass | NC_000023.10 | ChrX | 105,524,732 | 105,571,192 |
| nssv899 | Submitted genomic | NC_000023.8:g.(105 289284_?)_(?_10533 6656)inv | NCBI35 (hg17) | NC_000023.8 | ChrX | 105,289,284 | 105,336,656 | ||
| nssv10724 | Submitted genomic | NC_000023.8:g.(105 290920_?)_(?_10533 5934)inv | NCBI35 (hg17) | NC_000023.8 | ChrX | 105,290,920 | 105,335,934 | ||
| nssv9487 | Submitted genomic | NC_000023.8:g.(105 327161_?)_(?_10537 5844)inv | NCBI35 (hg17) | NC_000023.8 | ChrX | 105,327,161 | 105,375,844 | ||
| nssv900 | Submitted genomic | NC_000023.8:g.(105 330877_?)_(?_10537 7337)inv | NCBI35 (hg17) | NC_000023.8 | ChrX | 105,330,877 | 105,377,337 |