nsv7466
- Organism: Homo sapiens
- Study:nstd2 (Kidd et al. 2008)
- Variant Type:inversion
- Method Type:Sequencing
- Submitted on:NCBI35 (hg17)
- Variant Calls:11
- Validation:Yes
- Clinical Assertions: No
- Region Size:93,890
- Publication(s):Kidd et al. 2008
- TRACE: TEMPLATE_ID='1200277_ABC11_000047249700_D15'
- TRACE: TEMPLATE_ID='1200277_ABC11_000047253300_E21'
- TRACE: TEMPLATE_ID='1200277_ABC11_2_1_000047323700_E3'
- TRACE: TEMPLATE_ID='1200277_ABC11_2_1_000047323800_O3'
- TRACE: TEMPLATE_ID='1200277_ABC11_2_1_000047409200_C2'
- TRACE: TEMPLATE_ID='1200277_ABC11_2_1_000048181600_A13'
- TRACE: TEMPLATE_ID='1201894_ABC11_2_1_000049528800_N12'
- TRACE: TEMPLATE_ID='1203737_ABC13_11_000049696500_E10'
- TRACE: TEMPLATE_ID='1203873_ABC13_11_000048063600_K21'
- TRACE: TEMPLATE_ID='1203873_ABC13_11_000049707800_E7'
- TRACE: TEMPLATE_ID='1203873_ABC13_11_000049740000_P18'
- TRACE: TEMPLATE_ID='1203873_ABC13_11_000049745600_F18'
- TRACE: TEMPLATE_ID='1205403_ABC13_11_000000961322_I20'
- TRACE: TEMPLATE_ID='1205562_ABC14_3_1_000001108522_M10'
- TRACE: TEMPLATE_ID='1205562_ABC14_3_1_000001132322_M22'
- TRACE: TEMPLATE_ID='1207854_ABC14_4_1_000001079014_D12'
- TRACE: TEMPLATE_ID='1207854_ABC14_4_1_000001079814_O21'
- TRACE: TEMPLATE_ID='1207854_ABC14_4_1_000050081500_L24'
- TRACE: TEMPLATE_ID='1207854_ABC14_4_1_000050976700_G22'
- TRACE: TEMPLATE_ID='1207854_ABC14_4_1_000050998100_E22'
- TRACE: TEMPLATE_ID='1209408_ABC14_4_1_000050107800_F5'
- TRACE: TEMPLATE_ID='1209408_ABC14_4_1_000050112100_P11'
- TRACE: TEMPLATE_ID='1209408_ABC14_4_1_000050118500_P2'
- TRACE: TEMPLATE_ID='1210216_ABC14_4_1_000050204800_G20'
- TRACE: TEMPLATE_ID='1210216_ABC14_4_1_000050205100_E20'
- TRACE: TEMPLATE_ID='1210216_ABC14_4_1_000050205400_E15'
- TRACE: TEMPLATE_ID='164897_ABC7_000041848600_F15'
- TRACE: TEMPLATE_ID='166671_ABC7_000043051100_F22'
- TRACE: TEMPLATE_ID='166692_ABC7_000042757500_E22'
- TRACE: TEMPLATE_ID='166752_ABC7_000043065000_E22'
- TRACE: TEMPLATE_ID='170215_ABC9_3_2_000045238700_O16'
- TRACE: TEMPLATE_ID='170215_ABC9_3_2_000046004300_M21'
- TRACE: TEMPLATE_ID='170215_ABC9_3_2_000046005700_C4'
- TRACE: TEMPLATE_ID='171515_ABC9_3_5_000043926600_M11'
- TRACE: TEMPLATE_ID='171515_ABC9_3_5_000043935100_E10'
- TRACE: TEMPLATE_ID='171515_ABC9_3_5_000043958300_A15'
- TRACE: TEMPLATE_ID='173650_ABC10_2_1_000044079400_A20'
- TRACE: TEMPLATE_ID='173650_ABC10_2_1_000044085100_I2'
- TRACE: TEMPLATE_ID='173650_ABC10_2_1_000044487900_O10'
- TRACE: TEMPLATE_ID='174222_ABC10_2_1_000044589200_H15'
- TRACE: TEMPLATE_ID='174779_ABC12_000046357100_I13'
- TRACE: TEMPLATE_ID='174779_ABC12_000049066000_E5'
- TRACE: TEMPLATE_ID='174779_ABC12_000049075400_F14'
- TRACE: TEMPLATE_ID='174779_ABC12_000049095300_M20'
- TRACE: TEMPLATE_ID='174779_ABC12_000049209700_M24'
- TRACE: TEMPLATE_ID='178925_ABC12_000049287500_O23'
- Overlapping Genes
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 630 SVs from 57 studies. See in: genome view
Overlapping variant regions from other studies: 631 SVs from 57 studies. See in: genome view
Overlapping variant regions from other studies: 125 SVs from 25 studies. See in: genome view
Overlapping variant regions from other studies: 30 SVs from 5 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv7466 | Remapped | Good | GRCh38.p12 | Primary Assembly | First Pass | NC_000023.11 | ChrX | 150,365,114 | 150,459,003 |
| nsv7466 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000023.10 | ChrX | 149,533,381 | 149,627,269 |
| nsv7466 | Remapped | Good | GRCh37.p13 | PATCHES | Second Pass | NW_004070890.2 | ChrX|NW_00 4070890.2 | 5,889,512 | 5,983,401 |
| nsv7466 | Submitted genomic | NCBI35 (hg17) | Primary Assembly | NC_000023.8 | ChrX | 149,203,949 | 149,297,837 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv1879 | inversion | NA18555 | Sequencing | Paired-end mapping | 1,472 |
| nssv931 | inversion | NA19240 | Sequencing | Paired-end mapping | 1,381 |
| nssv6385 | inversion | NA12156 | Sequencing | Paired-end mapping | 3,265 |
| nssv10744 | inversion | NA18956 | Sequencing | Paired-end mapping | 905 |
| nssv9256 | inversion | SAMN00001588 | Sequencing | Paired-end mapping | 237 |
| nssv3827 | inversion | NA12878 | Sequencing | Paired-end mapping | 1,451 |
| nssv5267 | inversion | NA19129 | Sequencing | Paired-end mapping | 1,384 |
| nssv6387 | inversion | NA12156 | Sequencing | Paired-end mapping | 3,265 |
| nssv932 | inversion | NA19240 | Sequencing | Paired-end mapping | 1,381 |
| nssv3828 | inversion | NA12878 | Sequencing | Paired-end mapping | 1,451 |
| nssv5268 | inversion | NA19129 | Sequencing | Paired-end mapping | 1,384 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv1879 | Remapped | Pass | NC_000023.11:g.(15 0365114_?)_(150403 085_?)inv | GRCh38.p12 | First Pass | NC_000023.11 | ChrX | 150,365,114 | - | 150,403,085 | - |
| nssv931 | Remapped | Pass | NC_000023.11:g.(15 0366978_?)_(150403 085_?)inv | GRCh38.p12 | First Pass | NC_000023.11 | ChrX | 150,366,978 | - | 150,403,085 | - |
| nssv6385 | Remapped | Pass | NC_000023.11:g.(15 0368844_?)_(150403 085_?)inv | GRCh38.p12 | First Pass | NC_000023.11 | ChrX | 150,368,844 | - | 150,403,085 | - |
| nssv10744 | Remapped | Pass | NC_000023.11:g.(15 0369465_?)_(150403 085_?)inv | GRCh38.p12 | First Pass | NC_000023.11 | ChrX | 150,369,465 | - | 150,403,085 | - |
| nssv9256 | Remapped | Pass | NC_000023.11:g.(15 0370423_?)_(150403 085_?)inv | GRCh38.p12 | First Pass | NC_000023.11 | ChrX | 150,370,423 | - | 150,403,085 | - |
| nssv3827 | Remapped | Pass | NC_000023.11:g.(15 0371178_?)_(150403 085_?)inv | GRCh38.p12 | First Pass | NC_000023.11 | ChrX | 150,371,178 | - | 150,403,085 | - |
| nssv5267 | Remapped | Pass | NC_000023.11:g.(15 0372478_?)_(150403 085_?)inv | GRCh38.p12 | First Pass | NC_000023.11 | ChrX | 150,372,478 | - | 150,403,085 | - |
| nssv6387 | Remapped | Good | NC_000023.11:g.(15 0402839_?)_(?_1504 59003)inv | GRCh38.p12 | First Pass | NC_000023.11 | ChrX | 150,402,839 | - | - | 150,459,003 |
| nssv932 | Remapped | Pass | NC_000023.11:g.(?_ 150417009)_(?_1504 56133)inv | GRCh38.p12 | First Pass | NC_000023.11 | ChrX | - | 150,417,009 | - | 150,456,133 |
| nssv3828 | Remapped | Pass | NC_000023.11:g.(?_ 150417009)_(?_1504 56623)inv | GRCh38.p12 | First Pass | NC_000023.11 | ChrX | - | 150,417,009 | - | 150,456,623 |
| nssv5268 | Remapped | Pass | NC_000023.11:g.(?_ 150417009)_(?_1504 57669)inv | GRCh38.p12 | First Pass | NC_000023.11 | ChrX | - | 150,417,009 | - | 150,457,669 |
| nssv1879 | Remapped | Pass | NW_004070890.2:g.( 5889512_?)_(592656 2_?)inv | GRCh37.p13 | Second Pass | NW_004070890.2 | ChrX|NW_00 4070890.2 | 5,889,512 | - | 5,926,562 | - |
| nssv931 | Remapped | Pass | NW_004070890.2:g.( 5891376_?)_(592656 2_?)inv | GRCh37.p13 | Second Pass | NW_004070890.2 | ChrX|NW_00 4070890.2 | 5,891,376 | - | 5,926,562 | - |
| nssv6385 | Remapped | Pass | NW_004070890.2:g.( 5893242_?)_(592656 2_?)inv | GRCh37.p13 | Second Pass | NW_004070890.2 | ChrX|NW_00 4070890.2 | 5,893,242 | - | 5,926,562 | - |
| nssv10744 | Remapped | Pass | NW_004070890.2:g.( 5893863_?)_(592656 2_?)inv | GRCh37.p13 | Second Pass | NW_004070890.2 | ChrX|NW_00 4070890.2 | 5,893,863 | - | 5,926,562 | - |
| nssv9256 | Remapped | Pass | NW_004070890.2:g.( 5894821_?)_(592656 2_?)inv | GRCh37.p13 | Second Pass | NW_004070890.2 | ChrX|NW_00 4070890.2 | 5,894,821 | - | 5,926,562 | - |
| nssv3827 | Remapped | Pass | NW_004070890.2:g.( 5895576_?)_(592656 2_?)inv | GRCh37.p13 | Second Pass | NW_004070890.2 | ChrX|NW_00 4070890.2 | 5,895,576 | - | 5,926,562 | - |
| nssv5267 | Remapped | Pass | NW_004070890.2:g.( 5896876_?)_(592656 2_?)inv | GRCh37.p13 | Second Pass | NW_004070890.2 | ChrX|NW_00 4070890.2 | 5,896,876 | - | 5,926,562 | - |
| nssv932 | Remapped | Pass | NW_004070890.2:g.( ?_5942328)_(?_5980 531)inv | GRCh37.p13 | Second Pass | NW_004070890.2 | ChrX|NW_00 4070890.2 | - | 5,942,328 | - | 5,980,531 |
| nssv3828 | Remapped | Pass | NW_004070890.2:g.( ?_5942328)_(?_5981 021)inv | GRCh37.p13 | Second Pass | NW_004070890.2 | ChrX|NW_00 4070890.2 | - | 5,942,328 | - | 5,981,021 |
| nssv5268 | Remapped | Pass | NW_004070890.2:g.( ?_5942328)_(?_5982 067)inv | GRCh37.p13 | Second Pass | NW_004070890.2 | ChrX|NW_00 4070890.2 | - | 5,942,328 | - | 5,982,067 |
| nssv6387 | Remapped | Pass | NW_004070890.2:g.( ?_5942328)_(?_5983 401)inv | GRCh37.p13 | Second Pass | NW_004070890.2 | ChrX|NW_00 4070890.2 | - | 5,942,328 | - | 5,983,401 |
| nssv1879 | Remapped | Perfect | NC_000023.10:g.(14 9533381_?)_(?_1495 83986)inv | GRCh37.p13 | First Pass | NC_000023.10 | ChrX | 149,533,381 | - | - | 149,583,986 |
| nssv931 | Remapped | Perfect | NC_000023.10:g.(14 9535245_?)_(?_1495 80929)inv | GRCh37.p13 | First Pass | NC_000023.10 | ChrX | 149,535,245 | - | - | 149,580,929 |
| nssv6385 | Remapped | Perfect | NC_000023.10:g.(14 9537111_?)_(?_1495 78257)inv | GRCh37.p13 | First Pass | NC_000023.10 | ChrX | 149,537,111 | - | - | 149,578,257 |
| nssv10744 | Remapped | Perfect | NC_000023.10:g.(14 9537732_?)_(?_1495 77541)inv | GRCh37.p13 | First Pass | NC_000023.10 | ChrX | 149,537,732 | - | - | 149,577,541 |
| nssv9256 | Remapped | Perfect | NC_000023.10:g.(14 9538691_?)_(?_1495 78514)inv | GRCh37.p13 | First Pass | NC_000023.10 | ChrX | 149,538,691 | - | - | 149,578,514 |
| nssv3827 | Remapped | Perfect | NC_000023.10:g.(14 9539446_?)_(?_1495 80775)inv | GRCh37.p13 | First Pass | NC_000023.10 | ChrX | 149,539,446 | - | - | 149,580,775 |
| nssv5267 | Remapped | Perfect | NC_000023.10:g.(14 9540746_?)_(?_1495 79481)inv | GRCh37.p13 | First Pass | NC_000023.10 | ChrX | 149,540,746 | - | - | 149,579,481 |
| nssv6387 | Remapped | Perfect | NC_000023.10:g.(14 9571108_?)_(?_1496 27269)inv | GRCh37.p13 | First Pass | NC_000023.10 | ChrX | 149,571,108 | - | - | 149,627,269 |
| nssv5268 | Remapped | Perfect | NC_000023.10:g.(14 9571629_?)_(?_1496 25935)inv | GRCh37.p13 | First Pass | NC_000023.10 | ChrX | 149,571,629 | - | - | 149,625,935 |
| nssv3828 | Remapped | Perfect | NC_000023.10:g.(14 9572070_?)_(?_1496 24889)inv | GRCh37.p13 | First Pass | NC_000023.10 | ChrX | 149,572,070 | - | - | 149,624,889 |
| nssv932 | Remapped | Perfect | NC_000023.10:g.(14 9572731_?)_(?_1496 24399)inv | GRCh37.p13 | First Pass | NC_000023.10 | ChrX | 149,572,731 | - | - | 149,624,399 |
| nssv1879 | Submitted genomic | NC_000023.8:g.(149 203949_?)_(?_14925 4554)inv | NCBI35 (hg17) | NC_000023.8 | ChrX | 149,203,949 | - | - | 149,254,554 | ||
| nssv931 | Submitted genomic | NC_000023.8:g.(149 205813_?)_(?_14925 1497)inv | NCBI35 (hg17) | NC_000023.8 | ChrX | 149,205,813 | - | - | 149,251,497 | ||
| nssv6385 | Submitted genomic | NC_000023.8:g.(149 207679_?)_(?_14924 8825)inv | NCBI35 (hg17) | NC_000023.8 | ChrX | 149,207,679 | - | - | 149,248,825 | ||
| nssv10744 | Submitted genomic | NC_000023.8:g.(149 208300_?)_(?_14924 8109)inv | NCBI35 (hg17) | NC_000023.8 | ChrX | 149,208,300 | - | - | 149,248,109 | ||
| nssv9256 | Submitted genomic | NC_000023.8:g.(149 209259_?)_(?_14924 9082)inv | NCBI35 (hg17) | NC_000023.8 | ChrX | 149,209,259 | - | - | 149,249,082 | ||
| nssv3827 | Submitted genomic | NC_000023.8:g.(149 210014_?)_(?_14925 1343)inv | NCBI35 (hg17) | NC_000023.8 | ChrX | 149,210,014 | - | - | 149,251,343 | ||
| nssv5267 | Submitted genomic | NC_000023.8:g.(149 211314_?)_(?_14925 0049)inv | NCBI35 (hg17) | NC_000023.8 | ChrX | 149,211,314 | - | - | 149,250,049 | ||
| nssv6387 | Submitted genomic | NC_000023.8:g.(149 241676_?)_(?_14929 7837)inv | NCBI35 (hg17) | NC_000023.8 | ChrX | 149,241,676 | - | - | 149,297,837 | ||
| nssv5268 | Submitted genomic | NC_000023.8:g.(149 242197_?)_(?_14929 6503)inv | NCBI35 (hg17) | NC_000023.8 | ChrX | 149,242,197 | - | - | 149,296,503 | ||
| nssv3828 | Submitted genomic | NC_000023.8:g.(149 242638_?)_(?_14929 5457)inv | NCBI35 (hg17) | NC_000023.8 | ChrX | 149,242,638 | - | - | 149,295,457 | ||
| nssv932 | Submitted genomic | NC_000023.8:g.(149 243299_?)_(?_14929 4967)inv | NCBI35 (hg17) | NC_000023.8 | ChrX | 149,243,299 | - | - | 149,294,967 |