nsv817611
- Organism: Homo sapiens
- Study:nstd58 (Forsberg et al. 2012)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:13,032,018
- Publication(s):Forsberg et al. 2012
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 34460 SVs from 122 studies. See in: genome view
Overlapping variant regions from other studies: 34462 SVs from 122 studies. See in: genome view
Overlapping variant regions from other studies: 8015 SVs from 40 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv817611 | Remapped | Good | GRCh38.p12 | Primary Assembly | First Pass | NC_000020.11 | Chr20 | 32,262,445 | 32,262,445 | 45,294,462 | 45,294,462 |
| nsv817611 | Remapped | Good | GRCh37.p13 | Primary Assembly | First Pass | NC_000020.10 | Chr20 | 30,850,248 | 30,850,248 | 43,923,102 | 43,923,102 |
| nsv817611 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000020.9 | Chr20 | 30,313,909 | 30,333,587 | 43,245,460 | 43,356,516 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis |
|---|---|---|---|---|
| nssv1415555 | copy number loss | TP30-1 | SNP array | SNP genotyping analysis |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv1415555 | Remapped | Good | NC_000020.11:g.(32 262445_32262445)_( 45294462_45294462) del | GRCh38.p12 | First Pass | NC_000020.11 | Chr20 | 32,262,445 | 32,262,445 | 45,294,462 | 45,294,462 |
| nssv1415555 | Remapped | Good | NC_000020.10:g.(30 850248_30850248)_( 43923102_43923102) del | GRCh37.p13 | First Pass | NC_000020.10 | Chr20 | 30,850,248 | 30,850,248 | 43,923,102 | 43,923,102 |
| nssv1415555 | Submitted genomic | NC_000020.9:g.(303 13909_30333587)_(4 3245460_43356516)d el | NCBI36 (hg18) | NC_000020.9 | Chr20 | 30,313,909 | 30,333,587 | 43,245,460 | 43,356,516 |