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dbVar

Database of genomic structural variation

nsv817799

Organism: Homo sapiens

Study:nstd64 (Wang et al. 2007)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:NCBI35 (hg17)

Variant Calls:5
Validation:Not tested
Clinical Assertions: No
Region Size:20,161

Publication(s):Wang et al. 2007

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 579 SVs from 64 studies. See in: genome view

Remapped(Score: Perfect):67,629,808-67,649,968

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv817799	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000018.10	Chr18	67,629,808	67,649,968
nsv817799	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000018.9	Chr18	65,297,045	65,317,205
nsv817799	Submitted genomic		NCBI35 (hg17)	Primary Assembly		NC_000018.8	Chr18	63,448,025	63,468,185

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv1416261	copy number loss	NA19141	SNP array	Probe signal intensity	31
nssv1416408	copy number gain	NA18856	SNP array	Probe signal intensity	34
nssv1416409	copy number loss	NA18855	SNP array	Probe signal intensity	53
nssv1416682	copy number loss	NA19119	SNP array	Probe signal intensity	24
nssv1416685	copy number loss	NA19120	SNP array	Probe signal intensity	20

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv1416261	Remapped	Perfect	NC_000018.10:g.(?_ 67629808)_(6764996 8_?)del	GRCh38.p12	First Pass	NC_000018.10	Chr18	67,629,808	67,649,968
nssv1416408	Remapped	Perfect	NC_000018.10:g.(?_ 67629808)_(6764996 8_?)dup	GRCh38.p12	First Pass	NC_000018.10	Chr18	67,629,808	67,649,968
nssv1416409	Remapped	Perfect	NC_000018.10:g.(?_ 67629808)_(6764996 8_?)del	GRCh38.p12	First Pass	NC_000018.10	Chr18	67,629,808	67,649,968
nssv1416682	Remapped	Perfect	NC_000018.10:g.(?_ 67629808)_(6764996 8_?)del	GRCh38.p12	First Pass	NC_000018.10	Chr18	67,629,808	67,649,968
nssv1416685	Remapped	Perfect	NC_000018.10:g.(?_ 67629808)_(6764996 8_?)del	GRCh38.p12	First Pass	NC_000018.10	Chr18	67,629,808	67,649,968
nssv1416261	Remapped	Perfect	NC_000018.9:g.(?_6 5297045)_(65317205 _?)del	GRCh37.p13	First Pass	NC_000018.9	Chr18	65,297,045	65,317,205
nssv1416408	Remapped	Perfect	NC_000018.9:g.(?_6 5297045)_(65317205 _?)dup	GRCh37.p13	First Pass	NC_000018.9	Chr18	65,297,045	65,317,205
nssv1416409	Remapped	Perfect	NC_000018.9:g.(?_6 5297045)_(65317205 _?)del	GRCh37.p13	First Pass	NC_000018.9	Chr18	65,297,045	65,317,205
nssv1416682	Remapped	Perfect	NC_000018.9:g.(?_6 5297045)_(65317205 _?)del	GRCh37.p13	First Pass	NC_000018.9	Chr18	65,297,045	65,317,205
nssv1416685	Remapped	Perfect	NC_000018.9:g.(?_6 5297045)_(65317205 _?)del	GRCh37.p13	First Pass	NC_000018.9	Chr18	65,297,045	65,317,205
nssv1416261	Submitted genomic		NC_000018.8:g.(?_6 3448025)_(63468185 _?)del	NCBI35 (hg17)		NC_000018.8	Chr18	63,448,025	63,468,185
nssv1416408	Submitted genomic		NC_000018.8:g.(?_6 3448025)_(63468185 _?)dup	NCBI35 (hg17)		NC_000018.8	Chr18	63,448,025	63,468,185
nssv1416409	Submitted genomic		NC_000018.8:g.(?_6 3448025)_(63468185 _?)del	NCBI35 (hg17)		NC_000018.8	Chr18	63,448,025	63,468,185
nssv1416682	Submitted genomic		NC_000018.8:g.(?_6 3448025)_(63468185 _?)del	NCBI35 (hg17)		NC_000018.8	Chr18	63,448,025	63,468,185
nssv1416685	Submitted genomic		NC_000018.8:g.(?_6 3448025)_(63468185 _?)del	NCBI35 (hg17)		NC_000018.8	Chr18	63,448,025	63,468,185

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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