nsv817837
- Organism: Homo sapiens
- Study:nstd64 (Wang et al. 2007)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI35 (hg17)
- Variant Calls:9
- Validation:Not tested
- Clinical Assertions: No
- Region Size:7,015
- Publication(s):Wang et al. 2007
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 970 SVs from 75 studies. See in: genome view
Overlapping variant regions from other studies: 970 SVs from 75 studies. See in: genome view
Overlapping variant regions from other studies: 16 SVs from 7 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv817837 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000019.10 | Chr19 | 40,850,846 | 40,857,860 |
| nsv817837 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000019.9 | Chr19 | 41,356,751 | 41,363,765 |
| nsv817837 | Submitted genomic | NCBI35 (hg17) | Primary Assembly | NC_000019.8 | Chr19 | 46,048,591 | 46,055,605 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv1416013 | copy number loss | NA12750 | SNP array | Probe signal intensity | 28 |
| nssv1416014 | copy number loss | NA12740 | SNP array | Probe signal intensity | 27 |
| nssv1417111 | copy number loss | NA18537 | SNP array | Probe signal intensity | 23 |
| nssv1417364 | copy number loss | NA18944 | SNP array | Probe signal intensity | 13 |
| nssv1417418 | copy number loss | NA18952 | SNP array | Probe signal intensity | 20 |
| nssv1417486 | copy number loss | NA18965 | SNP array | Probe signal intensity | 19 |
| nssv1417596 | copy number loss | NA18978 | SNP array | Probe signal intensity | 31 |
| nssv1417622 | copy number loss | NA18987 | SNP array | Probe signal intensity | 12 |
| nssv1418237 | copy number gain | NA06985 | SNP array | Probe signal intensity | 28 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv1416013 | Remapped | Perfect | NC_000019.10:g.(?_ 40850846)_(4085786 0_?)del | GRCh38.p12 | First Pass | NC_000019.10 | Chr19 | 40,850,846 | 40,857,860 |
| nssv1416014 | Remapped | Perfect | NC_000019.10:g.(?_ 40850846)_(4085786 0_?)del | GRCh38.p12 | First Pass | NC_000019.10 | Chr19 | 40,850,846 | 40,857,860 |
| nssv1417111 | Remapped | Perfect | NC_000019.10:g.(?_ 40850846)_(4085786 0_?)del | GRCh38.p12 | First Pass | NC_000019.10 | Chr19 | 40,850,846 | 40,857,860 |
| nssv1417364 | Remapped | Perfect | NC_000019.10:g.(?_ 40850846)_(4085786 0_?)del | GRCh38.p12 | First Pass | NC_000019.10 | Chr19 | 40,850,846 | 40,857,860 |
| nssv1417418 | Remapped | Perfect | NC_000019.10:g.(?_ 40850846)_(4085786 0_?)del | GRCh38.p12 | First Pass | NC_000019.10 | Chr19 | 40,850,846 | 40,857,860 |
| nssv1417486 | Remapped | Perfect | NC_000019.10:g.(?_ 40850846)_(4085786 0_?)del | GRCh38.p12 | First Pass | NC_000019.10 | Chr19 | 40,850,846 | 40,857,860 |
| nssv1417596 | Remapped | Perfect | NC_000019.10:g.(?_ 40850846)_(4085786 0_?)del | GRCh38.p12 | First Pass | NC_000019.10 | Chr19 | 40,850,846 | 40,857,860 |
| nssv1417622 | Remapped | Perfect | NC_000019.10:g.(?_ 40850846)_(4085786 0_?)del | GRCh38.p12 | First Pass | NC_000019.10 | Chr19 | 40,850,846 | 40,857,860 |
| nssv1418237 | Remapped | Perfect | NC_000019.10:g.(?_ 40850846)_(4085786 0_?)dup | GRCh38.p12 | First Pass | NC_000019.10 | Chr19 | 40,850,846 | 40,857,860 |
| nssv1416013 | Remapped | Perfect | NC_000019.9:g.(?_4 1356751)_(41363765 _?)del | GRCh37.p13 | First Pass | NC_000019.9 | Chr19 | 41,356,751 | 41,363,765 |
| nssv1416014 | Remapped | Perfect | NC_000019.9:g.(?_4 1356751)_(41363765 _?)del | GRCh37.p13 | First Pass | NC_000019.9 | Chr19 | 41,356,751 | 41,363,765 |
| nssv1417111 | Remapped | Perfect | NC_000019.9:g.(?_4 1356751)_(41363765 _?)del | GRCh37.p13 | First Pass | NC_000019.9 | Chr19 | 41,356,751 | 41,363,765 |
| nssv1417364 | Remapped | Perfect | NC_000019.9:g.(?_4 1356751)_(41363765 _?)del | GRCh37.p13 | First Pass | NC_000019.9 | Chr19 | 41,356,751 | 41,363,765 |
| nssv1417418 | Remapped | Perfect | NC_000019.9:g.(?_4 1356751)_(41363765 _?)del | GRCh37.p13 | First Pass | NC_000019.9 | Chr19 | 41,356,751 | 41,363,765 |
| nssv1417486 | Remapped | Perfect | NC_000019.9:g.(?_4 1356751)_(41363765 _?)del | GRCh37.p13 | First Pass | NC_000019.9 | Chr19 | 41,356,751 | 41,363,765 |
| nssv1417596 | Remapped | Perfect | NC_000019.9:g.(?_4 1356751)_(41363765 _?)del | GRCh37.p13 | First Pass | NC_000019.9 | Chr19 | 41,356,751 | 41,363,765 |
| nssv1417622 | Remapped | Perfect | NC_000019.9:g.(?_4 1356751)_(41363765 _?)del | GRCh37.p13 | First Pass | NC_000019.9 | Chr19 | 41,356,751 | 41,363,765 |
| nssv1418237 | Remapped | Perfect | NC_000019.9:g.(?_4 1356751)_(41363765 _?)dup | GRCh37.p13 | First Pass | NC_000019.9 | Chr19 | 41,356,751 | 41,363,765 |
| nssv1416013 | Submitted genomic | NC_000019.8:g.(?_4 6048591)_(46055605 _?)del | NCBI35 (hg17) | NC_000019.8 | Chr19 | 46,048,591 | 46,055,605 | ||
| nssv1416014 | Submitted genomic | NC_000019.8:g.(?_4 6048591)_(46055605 _?)del | NCBI35 (hg17) | NC_000019.8 | Chr19 | 46,048,591 | 46,055,605 | ||
| nssv1417111 | Submitted genomic | NC_000019.8:g.(?_4 6048591)_(46055605 _?)del | NCBI35 (hg17) | NC_000019.8 | Chr19 | 46,048,591 | 46,055,605 | ||
| nssv1417364 | Submitted genomic | NC_000019.8:g.(?_4 6048591)_(46055605 _?)del | NCBI35 (hg17) | NC_000019.8 | Chr19 | 46,048,591 | 46,055,605 | ||
| nssv1417418 | Submitted genomic | NC_000019.8:g.(?_4 6048591)_(46055605 _?)del | NCBI35 (hg17) | NC_000019.8 | Chr19 | 46,048,591 | 46,055,605 | ||
| nssv1417486 | Submitted genomic | NC_000019.8:g.(?_4 6048591)_(46055605 _?)del | NCBI35 (hg17) | NC_000019.8 | Chr19 | 46,048,591 | 46,055,605 | ||
| nssv1417596 | Submitted genomic | NC_000019.8:g.(?_4 6048591)_(46055605 _?)del | NCBI35 (hg17) | NC_000019.8 | Chr19 | 46,048,591 | 46,055,605 | ||
| nssv1417622 | Submitted genomic | NC_000019.8:g.(?_4 6048591)_(46055605 _?)del | NCBI35 (hg17) | NC_000019.8 | Chr19 | 46,048,591 | 46,055,605 | ||
| nssv1418237 | Submitted genomic | NC_000019.8:g.(?_4 6048591)_(46055605 _?)dup | NCBI35 (hg17) | NC_000019.8 | Chr19 | 46,048,591 | 46,055,605 |