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dbVar

Database of genomic structural variation

nsv817860

Organism: Homo sapiens

Study:nstd64 (Wang et al. 2007)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:NCBI35 (hg17)

Variant Calls:3
Validation:Not tested
Clinical Assertions: No
Region Size:21,545

Publication(s):Wang et al. 2007

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 531 SVs from 79 studies. See in: genome view

Remapped(Score: Perfect):52,833,114-52,854,658

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv817860	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000019.10	Chr19	52,833,114	52,854,658
nsv817860	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000019.9	Chr19	53,336,367	53,357,911
nsv817860	Submitted genomic		NCBI35 (hg17)	Primary Assembly		NC_000019.8	Chr19	58,028,179	58,049,723

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv1417597	copy number loss	NA18978	SNP array	Probe signal intensity	31
nssv1417654	copy number gain	NA18992	SNP array	Probe signal intensity	24
nssv1418328	copy number gain	NA19092	SNP array	Probe signal intensity	25

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv1417597	Remapped	Perfect	NC_000019.10:g.(?_ 52833114)_(5285465 8_?)del	GRCh38.p12	First Pass	NC_000019.10	Chr19	52,833,114	52,854,658
nssv1417654	Remapped	Perfect	NC_000019.10:g.(?_ 52833114)_(5285465 8_?)dup	GRCh38.p12	First Pass	NC_000019.10	Chr19	52,833,114	52,854,658
nssv1418328	Remapped	Perfect	NC_000019.10:g.(?_ 52833114)_(5285465 8_?)dup	GRCh38.p12	First Pass	NC_000019.10	Chr19	52,833,114	52,854,658
nssv1417597	Remapped	Perfect	NC_000019.9:g.(?_5 3336367)_(53357911 _?)del	GRCh37.p13	First Pass	NC_000019.9	Chr19	53,336,367	53,357,911
nssv1417654	Remapped	Perfect	NC_000019.9:g.(?_5 3336367)_(53357911 _?)dup	GRCh37.p13	First Pass	NC_000019.9	Chr19	53,336,367	53,357,911
nssv1418328	Remapped	Perfect	NC_000019.9:g.(?_5 3336367)_(53357911 _?)dup	GRCh37.p13	First Pass	NC_000019.9	Chr19	53,336,367	53,357,911
nssv1417597	Submitted genomic		NC_000019.8:g.(?_5 8028179)_(58049723 _?)del	NCBI35 (hg17)		NC_000019.8	Chr19	58,028,179	58,049,723
nssv1417654	Submitted genomic		NC_000019.8:g.(?_5 8028179)_(58049723 _?)dup	NCBI35 (hg17)		NC_000019.8	Chr19	58,028,179	58,049,723
nssv1418328	Submitted genomic		NC_000019.8:g.(?_5 8028179)_(58049723 _?)dup	NCBI35 (hg17)		NC_000019.8	Chr19	58,028,179	58,049,723

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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