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dbVar

Database of genomic structural variation

nsv818024

Organism: Homo sapiens

Study:nstd64 (Wang et al. 2007)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:NCBI35 (hg17)

Variant Calls:1
Validation:Not tested
Clinical Assertions: No
Region Size:141,175

Publication(s):Wang et al. 2007

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 615 SVs from 56 studies. See in: genome view

Remapped(Score: Good):46,909,534-47,050,708

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv818024	Remapped	Good	GRCh38.p12	Primary Assembly	First Pass	NC_000023.11	ChrX	46,909,534	47,050,708
nsv818024	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000023.10	ChrX	46,768,969	46,910,110
nsv818024	Remapped	Good	GRCh37.p13	PATCHES	Second Pass	NW_004166866.1	ChrX\|NW_00 4166866.1	159,095	300,269
nsv818024	Submitted genomic		NCBI35 (hg17)	Primary Assembly		NC_000023.8	ChrX	46,525,223	46,666,364

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv1417802	copy number gain	NA12234	SNP array	Probe signal intensity	36

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv1417802	Remapped	Good	NC_000023.11:g.(?_ 46909534)_(4705070 8_?)dup	GRCh38.p12	First Pass	NC_000023.11	ChrX	46,909,534	47,050,708
nssv1417802	Remapped	Good	NW_004166866.1:g.( ?_159095)_(300269_ ?)dup	GRCh37.p13	Second Pass	NW_004166866.1	ChrX\|NW_00 4166866.1	159,095	300,269
nssv1417802	Remapped	Perfect	NC_000023.10:g.(?_ 46768969)_(4691011 0_?)dup	GRCh37.p13	First Pass	NC_000023.10	ChrX	46,768,969	46,910,110
nssv1417802	Submitted genomic		NC_000023.8:g.(?_4 6525223)_(46666364 _?)dup	NCBI35 (hg17)		NC_000023.8	ChrX	46,525,223	46,666,364

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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