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dbVar

Database of genomic structural variation

nsv818202

Organism: Homo sapiens

Study:nstd64 (Wang et al. 2007)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:NCBI35 (hg17)

Variant Calls:5
Validation:Not tested
Clinical Assertions: No
Region Size:4,064

Publication(s):Wang et al. 2007

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 488 SVs from 72 studies. See in: genome view

Remapped(Score: Perfect):191,348,132-191,352,195

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv818202	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000003.12	Chr3	191,348,132	191,352,195
nsv818202	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000003.11	Chr3	191,065,921	191,069,984
nsv818202	Submitted genomic		NCBI35 (hg17)	Primary Assembly		NC_000003.9	Chr3	192,548,623	192,552,686

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv1416230	copy number loss	NA12056	SNP array	Probe signal intensity	26
nssv1416231	copy number loss	NA10851	SNP array	Probe signal intensity	23
nssv1417011	copy number loss	NA06994	SNP array	Probe signal intensity	28
nssv1417012	copy number gain	NA07000	SNP array	Probe signal intensity	25
nssv1417013	copy number gain	NA07029	SNP array	Probe signal intensity	26

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv1416230	Remapped	Perfect	NC_000003.12:g.(?_ 191348132)_(191352 195_?)del	GRCh38.p12	First Pass	NC_000003.12	Chr3	191,348,132	191,352,195
nssv1416231	Remapped	Perfect	NC_000003.12:g.(?_ 191348132)_(191352 195_?)del	GRCh38.p12	First Pass	NC_000003.12	Chr3	191,348,132	191,352,195
nssv1417011	Remapped	Perfect	NC_000003.12:g.(?_ 191348132)_(191352 195_?)del	GRCh38.p12	First Pass	NC_000003.12	Chr3	191,348,132	191,352,195
nssv1417012	Remapped	Perfect	NC_000003.12:g.(?_ 191348132)_(191352 195_?)dup	GRCh38.p12	First Pass	NC_000003.12	Chr3	191,348,132	191,352,195
nssv1417013	Remapped	Perfect	NC_000003.12:g.(?_ 191348132)_(191352 195_?)dup	GRCh38.p12	First Pass	NC_000003.12	Chr3	191,348,132	191,352,195
nssv1416230	Remapped	Perfect	NC_000003.11:g.(?_ 191065921)_(191069 984_?)del	GRCh37.p13	First Pass	NC_000003.11	Chr3	191,065,921	191,069,984
nssv1416231	Remapped	Perfect	NC_000003.11:g.(?_ 191065921)_(191069 984_?)del	GRCh37.p13	First Pass	NC_000003.11	Chr3	191,065,921	191,069,984
nssv1417011	Remapped	Perfect	NC_000003.11:g.(?_ 191065921)_(191069 984_?)del	GRCh37.p13	First Pass	NC_000003.11	Chr3	191,065,921	191,069,984
nssv1417012	Remapped	Perfect	NC_000003.11:g.(?_ 191065921)_(191069 984_?)dup	GRCh37.p13	First Pass	NC_000003.11	Chr3	191,065,921	191,069,984
nssv1417013	Remapped	Perfect	NC_000003.11:g.(?_ 191065921)_(191069 984_?)dup	GRCh37.p13	First Pass	NC_000003.11	Chr3	191,065,921	191,069,984
nssv1416230	Submitted genomic		NC_000003.9:g.(?_1 92548623)_(1925526 86_?)del	NCBI35 (hg17)		NC_000003.9	Chr3	192,548,623	192,552,686
nssv1416231	Submitted genomic		NC_000003.9:g.(?_1 92548623)_(1925526 86_?)del	NCBI35 (hg17)		NC_000003.9	Chr3	192,548,623	192,552,686
nssv1417011	Submitted genomic		NC_000003.9:g.(?_1 92548623)_(1925526 86_?)del	NCBI35 (hg17)		NC_000003.9	Chr3	192,548,623	192,552,686
nssv1417012	Submitted genomic		NC_000003.9:g.(?_1 92548623)_(1925526 86_?)dup	NCBI35 (hg17)		NC_000003.9	Chr3	192,548,623	192,552,686
nssv1417013	Submitted genomic		NC_000003.9:g.(?_1 92548623)_(1925526 86_?)dup	NCBI35 (hg17)		NC_000003.9	Chr3	192,548,623	192,552,686

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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