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dbVar

Database of genomic structural variation

nsv818296

Organism: Homo sapiens

Study:nstd64 (Wang et al. 2007)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:NCBI35 (hg17)

Variant Calls:4
Validation:Not tested
Clinical Assertions: No
Region Size:172,697

Publication(s):Wang et al. 2007

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 942 SVs from 90 studies. See in: genome view

Remapped(Score: Perfect):167,894,196-168,066,892

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv818296	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000004.12	Chr4	167,894,196	168,066,892
nsv818296	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000004.11	Chr4	168,815,347	168,988,043
nsv818296	Submitted genomic		NCBI35 (hg17)	Primary Assembly		NC_000004.9	Chr4	169,190,077	169,362,773

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv1416234	copy number loss	NA12056	SNP array	Probe signal intensity	26
nssv1416235	copy number loss	NA10851	SNP array	Probe signal intensity	23
nssv1416761	copy number loss	NA12043	SNP array	Probe signal intensity	21
nssv1416772	copy number loss	NA10857	SNP array	Probe signal intensity	20

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv1416234	Remapped	Perfect	NC_000004.12:g.(?_ 167894196)_(168066 892_?)del	GRCh38.p12	First Pass	NC_000004.12	Chr4	167,894,196	168,066,892
nssv1416235	Remapped	Perfect	NC_000004.12:g.(?_ 167894196)_(168066 892_?)del	GRCh38.p12	First Pass	NC_000004.12	Chr4	167,894,196	168,066,892
nssv1416761	Remapped	Perfect	NC_000004.12:g.(?_ 167894196)_(168066 892_?)del	GRCh38.p12	First Pass	NC_000004.12	Chr4	167,894,196	168,066,892
nssv1416772	Remapped	Perfect	NC_000004.12:g.(?_ 167894196)_(168066 892_?)del	GRCh38.p12	First Pass	NC_000004.12	Chr4	167,894,196	168,066,892
nssv1416234	Remapped	Perfect	NC_000004.11:g.(?_ 168815347)_(168988 043_?)del	GRCh37.p13	First Pass	NC_000004.11	Chr4	168,815,347	168,988,043
nssv1416235	Remapped	Perfect	NC_000004.11:g.(?_ 168815347)_(168988 043_?)del	GRCh37.p13	First Pass	NC_000004.11	Chr4	168,815,347	168,988,043
nssv1416761	Remapped	Perfect	NC_000004.11:g.(?_ 168815347)_(168988 043_?)del	GRCh37.p13	First Pass	NC_000004.11	Chr4	168,815,347	168,988,043
nssv1416772	Remapped	Perfect	NC_000004.11:g.(?_ 168815347)_(168988 043_?)del	GRCh37.p13	First Pass	NC_000004.11	Chr4	168,815,347	168,988,043
nssv1416234	Submitted genomic		NC_000004.9:g.(?_1 69190077)_(1693627 73_?)del	NCBI35 (hg17)		NC_000004.9	Chr4	169,190,077	169,362,773
nssv1416235	Submitted genomic		NC_000004.9:g.(?_1 69190077)_(1693627 73_?)del	NCBI35 (hg17)		NC_000004.9	Chr4	169,190,077	169,362,773
nssv1416761	Submitted genomic		NC_000004.9:g.(?_1 69190077)_(1693627 73_?)del	NCBI35 (hg17)		NC_000004.9	Chr4	169,190,077	169,362,773
nssv1416772	Submitted genomic		NC_000004.9:g.(?_1 69190077)_(1693627 73_?)del	NCBI35 (hg17)		NC_000004.9	Chr4	169,190,077	169,362,773

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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