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dbVar

Database of genomic structural variation

nsv818426

Organism: Homo sapiens

Study:nstd64 (Wang et al. 2007)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:NCBI35 (hg17)

Variant Calls:1
Validation:Not tested
Clinical Assertions: No
Region Size:203,830

Publication(s):Wang et al. 2007

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 905 SVs from 76 studies. See in: genome view

Remapped(Score: Perfect):67,522,149-67,725,978

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv818426	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000006.12	Chr6	67,522,149	67,725,978
nsv818426	Remapped	Good	GRCh38.p12	PATCHES	Second Pass	NW_009646200.1	Chr6\|NW_00 9646200.1	1	198,218
nsv818426	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000006.11	Chr6	68,232,042	68,435,871
nsv818426	Submitted genomic		NCBI35 (hg17)	Primary Assembly		NC_000006.9	Chr6	68,288,763	68,492,592

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv1418462	copy number loss	NA19192	SNP array	Probe signal intensity	22

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv1418462	Remapped	Good	NW_009646200.1:g.( ?_1)_(198218_?)del	GRCh38.p12	Second Pass	NW_009646200.1	Chr6\|NW_00 9646200.1	1	198,218
nssv1418462	Remapped	Perfect	NC_000006.12:g.(?_ 67522149)_(6772597 8_?)del	GRCh38.p12	First Pass	NC_000006.12	Chr6	67,522,149	67,725,978
nssv1418462	Remapped	Perfect	NC_000006.11:g.(?_ 68232042)_(6843587 1_?)del	GRCh37.p13	First Pass	NC_000006.11	Chr6	68,232,042	68,435,871
nssv1418462	Submitted genomic		NC_000006.9:g.(?_6 8288763)_(68492592 _?)del	NCBI35 (hg17)		NC_000006.9	Chr6	68,288,763	68,492,592

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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