nsv819105
- Organism: Homo sapiens
- Study:nstd43 (Kim et al. 2009)
- Variant Type:insertion
- Method Type:Sequencing
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:104
- Publication(s):Kim et al. 2009
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 369 SVs from 35 studies. See in: genome view
Overlapping variant regions from other studies: 23 SVs from 17 studies. See in: genome view
Overlapping variant regions from other studies: 369 SVs from 35 studies. See in: genome view
Overlapping variant regions from other studies: 200 SVs from 15 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv819105 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000008.11 | Chr8 | 1,337,546 | 1,337,649 |
| nsv819105 | Remapped | Perfect | GRCh38.p12 | ALT_REF_LOCI_1 | Second Pass | NT_187565.1 | Chr8|NT_18 7565.1 | 56,762 | 56,865 |
| nsv819105 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000008.10 | Chr8 | 1,285,712 | 1,285,815 |
| nsv819105 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000008.9 | Chr8 | 1,273,119 | 1,273,222 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv1418894 | insertion | SAMN00002681 | Sequencing | Paired-end mapping | 1,333 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv1418894 | Remapped | Perfect | NT_187565.1:g.(567 62_?)_(?_56865)ins 993 | GRCh38.p12 | Second Pass | NT_187565.1 | Chr8|NT_18 7565.1 | 56,762 | 56,865 |
| nssv1418894 | Remapped | Perfect | NC_000008.11:g.(13 37546_?)_(?_133764 9)ins993 | GRCh38.p12 | First Pass | NC_000008.11 | Chr8 | 1,337,546 | 1,337,649 |
| nssv1418894 | Remapped | Perfect | NC_000008.10:g.(12 85712_?)_(?_128581 5)ins993 | GRCh37.p13 | First Pass | NC_000008.10 | Chr8 | 1,285,712 | 1,285,815 |
| nssv1418894 | Submitted genomic | NC_000008.9:g.(127 3119_?)_(?_1273222 )ins993 | NCBI36 (hg18) | NC_000008.9 | Chr8 | 1,273,119 | 1,273,222 |