nsv819761
- Organism: Homo sapiens
- Study:nstd43 (Kim et al. 2009)
- Variant Type:insertion
- Method Type:Sequencing
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:35
- Publication(s):Kim et al. 2009
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 251 SVs from 42 studies. See in: genome view
Overlapping variant regions from other studies: 108 SVs from 22 studies. See in: genome view
Overlapping variant regions from other studies: 108 SVs from 20 studies. See in: genome view
Overlapping variant regions from other studies: 128 SVs from 13 studies. See in: genome view
Variant Region Placement Information
Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Outer Stop |
---|---|---|---|---|---|---|---|---|---|
nsv819761 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000017.11 | Chr17 | 198,341 | 198,375 |
nsv819761 | Remapped | Perfect | GRCh38.p12 | ALT_REF_LOCI_1 | Second Pass | NW_003315952.3 | Chr17|NW_0 03315952.3 | 136,989 | 137,023 |
nsv819761 | Remapped | Perfect | GRCh37.p13 | PATCHES | First Pass | NW_004070872.2 | Chr17|NW_0 04070872.2 | 138,339 | 138,373 |
nsv819761 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000017.9 | Chr17 | 48,132 | 48,166 |
Variant Call Information
Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
---|---|---|---|---|---|
nssv1418897 | insertion | SAMN00002681 | Sequencing | Paired-end mapping | 1,333 |
Variant Call Placement Information
Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Outer Stop |
---|---|---|---|---|---|---|---|---|---|
nssv1418897 | Remapped | Perfect | NW_003315952.3:g.( 136989_?)_(?_13702 3)ins955 | GRCh38.p12 | Second Pass | NW_003315952.3 | Chr17|NW_0 03315952.3 | 136,989 | 137,023 |
nssv1418897 | Remapped | Perfect | NC_000017.11:g.(19 8341_?)_(?_198375) ins955 | GRCh38.p12 | First Pass | NC_000017.11 | Chr17 | 198,341 | 198,375 |
nssv1418897 | Remapped | Perfect | NW_004070872.2:g.( 138339_?)_(?_13837 3)ins955 | GRCh37.p13 | First Pass | NW_004070872.2 | Chr17|NW_0 04070872.2 | 138,339 | 138,373 |
nssv1418897 | Submitted genomic | NC_000017.9:g.(481 32_?)_(?_48166)ins 955 | NCBI36 (hg18) | NC_000017.9 | Chr17 | 48,132 | 48,166 |